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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:219.3 nTPM
HPA:219.3 nTPM
GTEx:151.4 nTPM
FANTOM5:489.2 Scaled Tags Per Million
Pig:125.5 nTPM
Mouse:144.0 nTPM
Allen mouse:3.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 219.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 190.8
2411 Female, age 72, unknown 208.1
1833 Male, age 53, unknown 203.6
2828 Female, age 72, unknown 202.1
1830 Male, age 51, unknown 201.3
1870 Female, age 42, unknown 198.8
1827 Male, age 72, unknown 193.6
2019 Male, age 18, unknown 188.2
2666 Male, age 74, left hemisphere 179.9
2219 Male, age 76, both hemispheres 176.4
2586 Male, age 75, left hemisphere 156.0
Dorsal raphe nucleus
nTPM: 194.2
2750 Male, age 76, both hemispheres 216.8
2016 Female, age 72, unknown 190.0
2047 Male, age 72, unknown 189.3
1828 Male, age 53, unknown 188.6
2298 Female, age 72, unknown 186.5
Inferior colliculus
nTPM: 194.8
1848 Female, age 42, unknown 198.2
2849 Male, age 72, unknown 197.2
2097 Female, age 72, unknown 192.4
1890 Male, age 53, unknown 191.3
Median raphe nucleus
nTPM: 219.3
2220 Male, age 76, midline 219.3
Pedunculopontine tegmental nucleus
nTPM: 192.3
2334 Male, age 80, both hemispheres 200.0
1921 Female, age 85, both hemispheres 198.1
2338 Male, age 61, both hemispheres 178.8
Periaquaductal grey, anterior
nTPM: 183.6
1947 Male, age 18, unknown 193.6
1795 Male, age 51, unknown 179.2
2502 Female, age 75, unknown 177.9
Periaquaductal grey, dorsal
nTPM: 202.4
2850 Male, age 76, both hemispheres 226.6
2464 Female, age 72, unknown 200.3
1831 Male, age 72, unknown 197.5
1840 Male, age 53, unknown 185.1
Periaquaductal grey, lateral
nTPM: 199.6
2140 Male, age 76, both hemispheres 214.9
2053 Male, age 18, unknown 196.3
2272 Male, age 74, both hemispheres 187.7
Pretectal area
nTPM: 193.7
2667 Female, age 75, unknown 218.7
2316 Male, age 76, right hemisphere 202.2
1815 Male, age 53, unknown 199.7
2407 Male, age 75, both hemispheres 194.4
2273 Male, age 74, both hemispheres 194.3
2825 Male, age 18, unknown 193.2
1817 Female, age 42, unknown 190.5
1944 Female, age 72, unknown 189.9
2224 Female, age 72, unknown 189.4
1816 Male, age 51, unknown 179.5
2007 Male, age 72, unknown 178.5
Red nucleus
nTPM: 206.5
2823 Male, age 76, right hemisphere 227.2
1904 Male, age 53, unknown 218.1
1954 Female, age 42, unknown 216.4
1821 Female, age 72, unknown 213.3
1865 Male, age 51, unknown 211.0
2503 Female, age 72, unknown 209.9
2725 Female, age 75, unknown 209.8
2227 Male, age 72, unknown 204.3
2769 Male, age 72, unknown 204.2
2588 Male, age 74, left hemisphere 193.6
2785 Male, age 18, unknown 188.4
2584 Male, age 75, left hemisphere 182.0
Substantia nigra
nTPM: 196.8
2699 Male, age 18, unknown 219.0
2409 Female, age 72, unknown 217.8
1851 Male, age 51, unknown 200.6
2241 Male, age 72, unknown 198.2
2590 Female, age 75, unknown 194.6
2583 Male, age 75, right hemisphere 193.6
1916 Female, age 42, unknown 193.3
1889 Female, age 72, unknown 191.7
1941 Male, age 53, unknown 188.8
2665 Male, age 74, both hemispheres 170.6
Superior colliculus
nTPM: 189.1
1913 Female, age 42, unknown 209.1
1995 Male, age 72, unknown 206.0
1895 Male, age 76, right hemisphere 200.7
2087 Female, age 72, unknown 192.9
1839 Male, age 51, unknown 190.6
2587 Male, age 74, left hemisphere 190.1
1796 Male, age 53, unknown 185.7
2261 Male, age 18, unknown 178.4
2668 Female, age 75, unknown 172.0
2664 Male, age 75, both hemispheres 165.1
Ventral tegmental area
nTPM: 196.3
2410 Female, age 72, unknown 210.4
2021 Male, age 53, unknown 199.9
2218 Male, age 76, both hemispheres 197.2
1915 Female, age 42, unknown 192.6
1942 Male, age 51, unknown 192.0
2223 Female, age 72, unknown 185.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 151.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 151.4
Samples: 139

Max nTPM: 357.9
Min nTPM: 71.2
Std nTPM: 41.6
Median nTPM: 147.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 357.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 273.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 236.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 235.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 228.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 228.2
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 223.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 219.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 218.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 214.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 213.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 489.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 489.2
FF:10158-103A5 76 years, female 489.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 125.5
Pig sample Sample description nTPM
Midbrain
nTPM: 123.2
Samples: 4

Max nTPM: 155.4
Min nTPM: 104.7
Sample A Female 155.4
Sample B Female 125.1
Sample C Male 104.7
Sample D Male 107.6
Periaqueductal gray
nTPM: 101.7
Samples: 3

Max nTPM: 111.8
Min nTPM: 96.3
Sample B Female 111.8
Sample C Male 96.9
Sample D Male 96.3
Substantia nigra
nTPM: 125.5
Samples: 4

Max nTPM: 133.1
Min nTPM: 113.2
Sample A Female 132.4
Sample B Female 113.2
Sample C Male 133.1
Sample D Male 123.3
Superior colliculi
nTPM: 115.6
Samples: 4

Max nTPM: 120.1
Min nTPM: 110.7
Sample A Female 112.8
Sample B Female 118.9
Sample C Male 120.1
Sample D Male 110.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 144.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 144.0
Samples: 4

Max nTPM: 153.6
Min nTPM: 137.4
Sample A Male 137.4
Sample B Male 140.5
Sample C Female 153.6
Sample D Female 144.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.1
67978473 Antisense, RP_040923_01_B10, Mouse strain C57BL/6J (56 days, male) 6.2
71991953 Antisense, RP_051012_03_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.