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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:43.5 nTPM
HPA:43.5 nTPM
GTEx:39.7 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:19.7 nTPM
Mouse:42.4 nTPM
Allen mouse:2.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003927
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.7
2290 Female, age 72, unknown 41.7
2481 Female, age 94, left hemisphere 41.7
1857 Female, age 85, left hemisphere 41.4
1854 Male, age 80, left hemisphere 40.6
2288 Male, age 75, left hemisphere 40.5
2846 Female, age 79, unknown 40.5
2289 Male, age 61, right hemisphere 39.6
1781 Male, age 74, unknown 39.3
Claustrum
nTPM: 38.8
2292 Female, age 85, both hemispheres 41.1
1956 Male, age 74, unknown 40.2
2198 Male, age 80, both hemispheres 39.7
2196 Female, age 79, unknown 39.1
2645 Female, age 72, unknown 38.6
2491 Male, age 75, both hemispheres 38.4
2568 Male, age 61, both hemispheres 38.4
2284 Female, age 91, both hemispheres 37.1
2392 Female, age 94, both hemispheres 36.6
Globus pallidus, externus
nTPM: 43.5
1996 Male, age 80, right hemisphere 48.8
2772 Female, age 79, unknown 43.6
2567 Female, age 72, unknown 42.3
2646 Male, age 61, right hemisphere 42.3
2395 Male, age 75, both hemispheres 40.5
Globus pallidus, internus
nTPM: 42.1
2287 Male, age 75, right hemisphere 44.5
2778 Female, age 91, both hemispheres 42.5
2037 Male, age 80, right hemisphere 42.3
2111 Female, age 85, right hemisphere 42.3
2483 Female, age 94, right hemisphere 41.5
1818 Male, age 74, unknown 41.2
2566 Female, age 72, unknown 40.5
Nucleus accumbens
nTPM: 40.7
1806 Female, age 85, left hemisphere 43.2
1783 Male, age 74, unknown 41.8
2698 Female, age 72, unknown 41.0
2286 Male, age 75, left hemisphere 40.9
2732 Male, age 80, right hemisphere 40.7
1856 Female, age 91, right hemisphere 40.2
2824 Male, age 61, right hemisphere 39.1
2391 Female, age 94, left hemisphere 38.4
Nucleus basalis of Meynert
nTPM: 40.5
2569 Male, age 61, both hemispheres 41.1
2821 Male, age 75, both hemispheres 40.9
2484 Female, age 94, left hemisphere 40.8
2393 Male, age 80, right hemisphere 39.2
Nucleus of the diagonal band
nTPM: 38.2
1979 Male, age 74, unknown 39.4
2195 Female, age 85, both hemispheres 38.7
1812 Female, age 91, both hemispheres 38.1
2775 Male, age 80, right hemisphere 37.5
2029 Male, age 61, right hemisphere 37.2
Olfactory tubercle
nTPM: 37.3
2487 Female, age 94, left hemisphere 38.0
1998 Female, age 91, both hemispheres 37.7
1846 Male, age 80, right hemisphere 37.4
2856 Male, age 75, right hemisphere 35.9
Putamen
nTPM: 41.4
2482 Female, age 94, left hemisphere 44.2
2489 Female, age 72, unknown 42.5
2466 Female, age 79, unknown 42.4
2647 Male, age 75, left hemisphere 41.3
1937 Female, age 91, right hemisphere 40.4
1829 Male, age 74, unknown 39.9
1838 Male, age 80, right hemisphere 39.3
Septal nuclei
nTPM: 38.5
2031 Female, age 72, unknown 40.9
2199 Male, age 80, right hemisphere 40.2
1960 Male, age 74, unknown 39.9
2059 Female, age 85, both hemispheres 38.3
2009 Female, age 91, both hemispheres 37.3
2629 Female, age 94, right hemisphere 37.1
2394 Male, age 61, left hemisphere 35.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.9
Samples: 246

Max nTPM: 76.7
Min nTPM: 16.1
Std nTPM: 6.9
Median nTPM: 36.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 76.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 58.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 57.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 54.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 52.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 52.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 51.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 51.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 50.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 49.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 49.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 38.5
Samples: 246

Max nTPM: 72.6
Min nTPM: 22.4
Std nTPM: 8.1
Median nTPM: 37.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 72.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 71.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 69.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 63.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 61.4
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 60.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 59.2
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 59.1
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 58.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 58.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 54.8
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Brain - Putamen (basal ganglia)
Average nTPM: 39.7
Samples: 205

Max nTPM: 82.3
Min nTPM: 23.6
Std nTPM: 7.5
Median nTPM: 38.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 82.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 70.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 60.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 59.7
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 59.3
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 57.3
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 57.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 56.3
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 56.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 55.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 53.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.6
FF:10164-103B2 76 years, female 45.6
Globus pallidus
Scaled Tags Per Million: 41.7
FF:10161-103A8 76 years, female 51.1
FF:10175-103C4 60 years, female 32.3
Nucleus accumbens
Scaled Tags Per Million: 38.1
FF:10037-101F1 23-56 years, mixed 38.1
Putamen
Scaled Tags Per Million: 51.2
FF:10176-103C5 60 years, female 51.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.7
Pig sample Sample description nTPM
Caudate
nTPM: 18.7
Samples: 4

Max nTPM: 21.2
Min nTPM: 16.3
Sample A Female 16.3
Sample B Female 21.2
Sample C Male 20.8
Sample D Male 16.5
Putamen
nTPM: 19.7
Samples: 4

Max nTPM: 25.2
Min nTPM: 16.2
Sample A Female 17.5
Sample B Female 16.2
Sample C Male 25.2
Sample D Male 19.8
Septum
nTPM: 18.8
Samples: 4

Max nTPM: 20.6
Min nTPM: 16.5
Sample A Female 20.6
Sample B Female 18.1
Sample C Male 19.9
Sample D Male 16.5
Ventral pallidum
nTPM: 17.0
Samples: 4

Max nTPM: 18.3
Min nTPM: 15.6
Sample A Female 15.9
Sample B Female 18.3
Sample C Male 18.1
Sample D Male 15.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 42.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 39.3
Samples: 4

Max nTPM: 40.8
Min nTPM: 37.7
Sample A Male 39.3
Sample B Male 37.7
Sample C Female 39.4
Sample D Female 40.8
Septum
nTPM: 42.5
Samples: 4

Max nTPM: 44.5
Min nTPM: 39.6
Sample A Male 39.6
Sample B Male 42.8
Sample C Female 44.5
Sample D Female 42.9
Ventral forebrain
nTPM: 38.6
Samples: 4

Max nTPM: 41.8
Min nTPM: 36.0
Sample A Male 36.0
Sample B Male 38.1
Sample C Female 41.8
Sample D Female 38.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
73718047 Antisense, RP_051121_04_C01, Mouse strain C57BL/6J (56 days, male) 1.9
68924449 Antisense, RP_050303_02_D04, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 2.1
73718047 Antisense, RP_051121_04_C01, Mouse strain C57BL/6J (56 days, male) 3.1
68924449 Antisense, RP_050303_02_D04, Mouse strain C57BL/6J (56 days, male) 1.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.