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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.5 nTPM
HPA:41.5 nTPM
GTEx:35.3 nTPM
FANTOM5:48.6 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:32.3 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.7
1870 Female, age 42, unknown 41.9
2666 Male, age 74, left hemisphere 41.0
1833 Male, age 53, unknown 40.8
2828 Female, age 72, unknown 40.8
2586 Male, age 75, left hemisphere 40.5
1830 Male, age 51, unknown 40.3
2019 Male, age 18, unknown 38.9
2411 Female, age 72, unknown 38.6
1827 Male, age 72, unknown 37.5
2219 Male, age 76, both hemispheres 37.1
Dorsal raphe nucleus
nTPM: 41.5
2298 Female, age 72, unknown 42.5
2016 Female, age 72, unknown 42.2
2047 Male, age 72, unknown 42.0
1828 Male, age 53, unknown 40.8
2750 Male, age 76, both hemispheres 39.9
Inferior colliculus
nTPM: 39.8
2849 Male, age 72, unknown 40.2
1848 Female, age 42, unknown 40.0
1890 Male, age 53, unknown 39.8
2097 Female, age 72, unknown 39.3
Median raphe nucleus
nTPM: 39.1
2220 Male, age 76, midline 39.1
Pedunculopontine tegmental nucleus
nTPM: 40.5
2338 Male, age 61, both hemispheres 42.8
2334 Male, age 80, both hemispheres 40.8
1921 Female, age 85, both hemispheres 37.8
Periaquaductal grey, anterior
nTPM: 41.5
1947 Male, age 18, unknown 42.2
2502 Female, age 75, unknown 41.4
1795 Male, age 51, unknown 41.0
Periaquaductal grey, dorsal
nTPM: 38.8
2850 Male, age 76, both hemispheres 40.4
1840 Male, age 53, unknown 39.8
1831 Male, age 72, unknown 37.7
2464 Female, age 72, unknown 37.2
Periaquaductal grey, lateral
nTPM: 40.5
2272 Male, age 74, both hemispheres 42.6
2053 Male, age 18, unknown 39.5
2140 Male, age 76, both hemispheres 39.2
Pretectal area
nTPM: 39.2
2273 Male, age 74, both hemispheres 41.7
2007 Male, age 72, unknown 40.8
2224 Female, age 72, unknown 40.7
1817 Female, age 42, unknown 40.5
2825 Male, age 18, unknown 40.3
1815 Male, age 53, unknown 38.4
2667 Female, age 75, unknown 38.4
1944 Female, age 72, unknown 37.7
2316 Male, age 76, right hemisphere 37.7
2407 Male, age 75, both hemispheres 37.7
1816 Male, age 51, unknown 37.4
Red nucleus
nTPM: 40.9
1904 Male, age 53, unknown 42.4
2503 Female, age 72, unknown 42.2
2227 Male, age 72, unknown 41.8
2769 Male, age 72, unknown 41.5
1821 Female, age 72, unknown 41.4
1954 Female, age 42, unknown 41.4
1865 Male, age 51, unknown 41.3
2725 Female, age 75, unknown 40.7
2584 Male, age 75, left hemisphere 40.6
2785 Male, age 18, unknown 40.1
2588 Male, age 74, left hemisphere 39.6
2823 Male, age 76, right hemisphere 38.3
Substantia nigra
nTPM: 39.9
2665 Male, age 74, both hemispheres 42.4
1916 Female, age 42, unknown 42.1
2699 Male, age 18, unknown 41.8
1851 Male, age 51, unknown 41.5
2590 Female, age 75, unknown 40.3
2583 Male, age 75, right hemisphere 39.2
1889 Female, age 72, unknown 38.9
2241 Male, age 72, unknown 38.3
1941 Male, age 53, unknown 37.5
2409 Female, age 72, unknown 37.0
Superior colliculus
nTPM: 39.2
1796 Male, age 53, unknown 40.8
1913 Female, age 42, unknown 40.7
1995 Male, age 72, unknown 40.3
2668 Female, age 75, unknown 39.8
2664 Male, age 75, both hemispheres 39.6
2587 Male, age 74, left hemisphere 39.4
1839 Male, age 51, unknown 39.0
2261 Male, age 18, unknown 38.0
2087 Female, age 72, unknown 37.7
1895 Male, age 76, right hemisphere 36.7
Ventral tegmental area
nTPM: 40.3
1915 Female, age 42, unknown 41.6
2223 Female, age 72, unknown 40.7
2410 Female, age 72, unknown 40.5
1942 Male, age 51, unknown 40.2
2218 Male, age 76, both hemispheres 39.7
2021 Male, age 53, unknown 38.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.3
Samples: 139

Max nTPM: 74.2
Min nTPM: 22.0
Std nTPM: 8.6
Median nTPM: 33.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 74.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 68.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 64.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 60.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 60.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 58.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 54.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 51.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 51.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 51.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 50.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.6
FF:10158-103A5 76 years, female 48.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.0
Pig sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 24.0
Min nTPM: 15.5
Sample A Female 24.0
Sample B Female 18.8
Sample C Male 15.5
Sample D Male 17.2
Periaqueductal gray
nTPM: 18.0
Samples: 3

Max nTPM: 19.9
Min nTPM: 16.3
Sample B Female 17.9
Sample C Male 19.9
Sample D Male 16.3
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 22.9
Min nTPM: 17.0
Sample A Female 22.9
Sample B Female 20.2
Sample C Male 20.0
Sample D Male 17.0
Superior colliculi
nTPM: 21.0
Samples: 4

Max nTPM: 25.0
Min nTPM: 16.1
Sample A Female 25.0
Sample B Female 24.2
Sample C Male 16.1
Sample D Male 18.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.3
Samples: 4

Max nTPM: 34.4
Min nTPM: 29.2
Sample A Male 29.2
Sample B Male 31.3
Sample C Female 34.3
Sample D Female 34.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
73718047 Antisense, RP_051121_04_C01, Mouse strain C57BL/6J (56 days, male) 5.7
68924449 Antisense, RP_050303_02_D04, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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