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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:44.5 nTPM
HPA:44.5 nTPM
GTEx:36.8 nTPM
FANTOM5:39.1 Scaled Tags Per Million
Pig:25.5 nTPM
Mouse:45.2 nTPM
Allen mouse:4.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003927
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 44.5
Sample id Sample description nTPM
Hippocampus
nTPM: 42.6
1855 Male, age 76, left hemisphere 45.4
2621 Female, age 67, right hemisphere 44.9
1898 Male, age 80, left hemisphere 43.6
2148 Female, age 91, left hemisphere 41.6
1911 Female, age 85, right hemisphere 40.7
2529 Female, age 94, left hemisphere 39.6
Dentate gyrus
nTPM: 42.3
2530 Female, age 94, left hemisphere 48.9
2010 Male, age 76, both hemispheres 47.1
1927 Female, age 91, both hemispheres 40.8
2246 Female, age 85, both hemispheres 40.4
2528 Male, age 74, both hemispheres 39.4
2531 Female, age 67, both hemispheres 37.1
Entorhinal gyrus
nTPM: 39.5
1787 Male, age 76, left hemisphere 40.6
2613 Female, age 94, left hemisphere 40.6
2117 Female, age 91, right hemisphere 40.5
1938 Female, age 85, left hemisphere 39.0
2764 Male, age 80, right hemisphere 38.8
2686 Male, age 75, right hemisphere 37.3
Hippocampus, CA1
nTPM: 44.5
2749 Male, age 80, left hemisphere 55.0
1873 Female, age 85, both hemispheres 44.6
2527 Male, age 74, both hemispheres 42.7
2045 Male, age 76, both hemispheres 41.1
2082 Female, age 91, right hemisphere 39.2
Hippocampus, CA2
nTPM: 42.2
1963 Male, age 80, left hemisphere 46.8
1892 Male, age 76, both hemispheres 45.5
2249 Male, age 74, both hemispheres 42.6
2437 Female, age 94, left hemisphere 40.8
2113 Female, age 91, right hemisphere 39.5
1940 Female, age 85, left hemisphere 38.1
Hippocampus, CA3
nTPM: 42.2
2137 Male, age 80, left hemisphere 44.3
2436 Male, age 74, both hemispheres 44.3
2620 Female, age 94, left hemisphere 42.5
1867 Male, age 76, both hemispheres 41.7
2861 Female, age 67, both hemispheres 40.8
1891 Female, age 85, both hemispheres 39.4
Parahippocampal cortex
nTPM: 38.2
2250 Female, age 67, right hemisphere 40.2
2018 Male, age 76, both hemispheres 40.0
2692 Male, age 74, both hemispheres 39.0
2245 Female, age 91, both hemispheres 38.5
2532 Female, age 72, left hemisphere 38.4
1990 Female, age 91, right hemisphere 38.3
2622 Female, age 67, right hemisphere 38.2
1933 Female, age 85, both hemispheres 37.3
1850 Male, age 80, both hemispheres 36.9
2693 Female, age 94, both hemispheres 34.8
Perirhinal gyrus
nTPM: 37.8
1847 Female, age 91, left hemisphere 39.0
2521 Female, age 94, right hemisphere 38.4
1794 Male, age 80, right hemisphere 38.0
1841 Female, age 85, right hemisphere 37.2
2848 Male, age 76, right hemisphere 36.7
Subiculum
nTPM: 40.6
2042 Male, age 76, both hemispheres 43.4
1901 Male, age 80, both hemispheres 41.2
1977 Female, age 85, both hemispheres 40.8
2619 Male, age 74, both hemispheres 40.3
2438 Female, age 94, left hemisphere 39.5
2729 Female, age 91, right hemisphere 38.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 36.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 36.8
Samples: 197

Max nTPM: 66.1
Min nTPM: 20.4
Std nTPM: 8.0
Median nTPM: 35.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 66.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 61.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 60.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 57.8
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 54.3
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 53.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 53.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 52.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 51.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 50.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 50.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 39.1
FF:10153-102I9 76 years, female 43.7
FF:10169-103B7 60 years, female 34.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.5
Samples: 4

Max nTPM: 36.2
Min nTPM: 20.2
Sample A Female 36.2
Sample B Female 23.8
Sample C Male 21.7
Sample D Male 20.2
Entorhinal cortex
nTPM: 15.5
Samples: 4

Max nTPM: 17.3
Min nTPM: 11.7
Sample A Female 16.0
Sample B Female 17.3
Sample C Male 16.9
Sample D Male 11.7
Subiculum
nTPM: 16.1
Samples: 4

Max nTPM: 20.2
Min nTPM: 14.3
Sample A Female 20.2
Sample B Female 15.4
Sample C Male 14.6
Sample D Male 14.3
Ventral hippocampus
nTPM: 19.8
Samples: 4

Max nTPM: 24.6
Min nTPM: 14.0
Sample A Female 18.8
Sample B Female 14.0
Sample C Male 21.6
Sample D Male 24.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 45.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 33.9
Samples: 4

Max nTPM: 39.1
Min nTPM: 30.1
Sample A Male 30.1
Sample B Male 31.4
Sample C Female 35.0
Sample D Female 39.1
Hippocampal formation
nTPM: 45.2
Samples: 4

Max nTPM: 56.6
Min nTPM: 36.2
Sample A Male 36.2
Sample B Male 42.6
Sample C Female 56.6
Sample D Female 45.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.2
73718047 Antisense, RP_051121_04_C01, Mouse strain C57BL/6J (56 days, male) 5.8
68924449 Antisense, RP_050303_02_D04, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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