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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:50.8 nTPM
HPA:50.8 nTPM
GTEx:59.2 nTPM
FANTOM5:138.9 Scaled Tags Per Million
Pig:70.0 nTPM
Mouse:57.1 nTPM
Allen mouse:2.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008019Antibody HPA060804
Glial cells LowNot detected
Neuronal cells LowNot detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 50.8
Sample id Sample description nTPM
Hippocampus
nTPM: 46.1
1911 Female, age 85, right hemisphere 50.5
1898 Male, age 80, left hemisphere 50.0
2529 Female, age 94, left hemisphere 49.0
1855 Male, age 76, left hemisphere 45.5
2621 Female, age 67, right hemisphere 41.8
2148 Female, age 91, left hemisphere 39.8
Dentate gyrus
nTPM: 45.5
2528 Male, age 74, both hemispheres 52.8
2530 Female, age 94, left hemisphere 49.6
2010 Male, age 76, both hemispheres 49.1
2246 Female, age 85, both hemispheres 43.4
2531 Female, age 67, both hemispheres 39.2
1927 Female, age 91, both hemispheres 38.9
Entorhinal gyrus
nTPM: 41.4
2117 Female, age 91, right hemisphere 58.2
1938 Female, age 85, left hemisphere 42.8
1787 Male, age 76, left hemisphere 39.4
2764 Male, age 80, right hemisphere 38.0
2686 Male, age 75, right hemisphere 36.7
2613 Female, age 94, left hemisphere 33.5
Hippocampus, CA1
nTPM: 42.2
2527 Male, age 74, both hemispheres 49.2
1873 Female, age 85, both hemispheres 45.8
2082 Female, age 91, right hemisphere 41.0
2045 Male, age 76, both hemispheres 38.4
2749 Male, age 80, left hemisphere 36.7
Hippocampus, CA2
nTPM: 45.9
2249 Male, age 74, both hemispheres 55.4
1940 Female, age 85, left hemisphere 46.9
1963 Male, age 80, left hemisphere 46.2
2437 Female, age 94, left hemisphere 46.0
2113 Female, age 91, right hemisphere 44.4
1892 Male, age 76, both hemispheres 36.3
Hippocampus, CA3
nTPM: 42.6
1891 Female, age 85, both hemispheres 57.2
1867 Male, age 76, both hemispheres 44.8
2436 Male, age 74, both hemispheres 44.7
2137 Male, age 80, left hemisphere 39.1
2861 Female, age 67, both hemispheres 35.0
2620 Female, age 94, left hemisphere 34.7
Parahippocampal cortex
nTPM: 41.7
1990 Female, age 91, right hemisphere 46.7
2018 Male, age 76, both hemispheres 46.0
2692 Male, age 74, both hemispheres 45.2
2532 Female, age 72, left hemisphere 43.9
1850 Male, age 80, both hemispheres 43.7
1933 Female, age 85, both hemispheres 42.3
2250 Female, age 67, right hemisphere 40.9
2245 Female, age 91, both hemispheres 39.7
2693 Female, age 94, both hemispheres 37.8
2622 Female, age 67, right hemisphere 30.5
Perirhinal gyrus
nTPM: 37.0
2521 Female, age 94, right hemisphere 40.1
1794 Male, age 80, right hemisphere 37.0
1841 Female, age 85, right hemisphere 36.9
2848 Male, age 76, right hemisphere 35.9
1847 Female, age 91, left hemisphere 35.1
Subiculum
nTPM: 50.8
2042 Male, age 76, both hemispheres 58.3
1901 Male, age 80, both hemispheres 54.3
2438 Female, age 94, left hemisphere 53.8
1977 Female, age 85, both hemispheres 48.1
2729 Female, age 91, right hemisphere 47.9
2619 Male, age 74, both hemispheres 42.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 59.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 59.2
Samples: 197

Max nTPM: 229.2
Min nTPM: 13.6
Std nTPM: 31.6
Median nTPM: 50.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 229.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 161.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 147.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 137.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 136.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 127.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 119.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 118.7
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 118.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 118.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 117.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 138.9
FF:10153-102I9 76 years, female 143.9
FF:10169-103B7 60 years, female 133.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 70.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 70.0
Samples: 4

Max nTPM: 100.3
Min nTPM: 32.1
Sample A Female 95.5
Sample B Female 52.0
Sample C Male 100.3
Sample D Male 32.1
Entorhinal cortex
nTPM: 42.3
Samples: 4

Max nTPM: 47.4
Min nTPM: 31.8
Sample A Female 44.9
Sample B Female 47.4
Sample C Male 45.2
Sample D Male 31.8
Subiculum
nTPM: 53.6
Samples: 4

Max nTPM: 65.3
Min nTPM: 49.1
Sample A Female 65.3
Sample B Female 49.1
Sample C Male 49.4
Sample D Male 50.5
Ventral hippocampus
nTPM: 52.2
Samples: 4

Max nTPM: 61.3
Min nTPM: 42.5
Sample A Female 61.3
Sample B Female 42.5
Sample C Male 50.7
Sample D Male 54.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 57.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.9
Samples: 4

Max nTPM: 49.8
Min nTPM: 34.3
Sample A Male 49.8
Sample B Male 40.2
Sample C Female 47.1
Sample D Female 34.3
Hippocampal formation
nTPM: 57.1
Samples: 4

Max nTPM: 74.0
Min nTPM: 46.5
Sample A Male 46.5
Sample B Male 48.6
Sample C Female 74.0
Sample D Female 59.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
73769125 Antisense, RP_051121_04_B01, Mouse strain C57BL/6J (56 days, male) 2.6
69835565 Antisense, RP_050203_01_D03, Mouse strain C57BL/6J (56 days, male) 2.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.