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NFU1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.7 nTPM
HPA:39.7 nTPM
GTEx:53.5 nTPM
FANTOM5:67.9 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:72.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.5
1870 Female, age 42, unknown 39.4
2411 Female, age 72, unknown 39.0
2019 Male, age 18, unknown 37.1
1827 Male, age 72, unknown 36.7
2219 Male, age 76, both hemispheres 36.4
2666 Male, age 74, left hemisphere 36.2
1833 Male, age 53, unknown 36.0
1830 Male, age 51, unknown 35.9
2586 Male, age 75, left hemisphere 34.2
2828 Female, age 72, unknown 33.6
Dorsal raphe nucleus
nTPM: 37.3
2750 Male, age 76, both hemispheres 38.9
1828 Male, age 53, unknown 37.7
2298 Female, age 72, unknown 37.3
2047 Male, age 72, unknown 36.8
2016 Female, age 72, unknown 35.6
Inferior colliculus
nTPM: 37.8
2097 Female, age 72, unknown 39.2
1848 Female, age 42, unknown 37.9
1890 Male, age 53, unknown 37.5
2849 Male, age 72, unknown 36.7
Median raphe nucleus
nTPM: 37.7
2220 Male, age 76, midline 37.7
Pedunculopontine tegmental nucleus
nTPM: 39.7
2338 Male, age 61, both hemispheres 41.3
2334 Male, age 80, both hemispheres 40.7
1921 Female, age 85, both hemispheres 37.2
Periaquaductal grey, anterior
nTPM: 36.3
1947 Male, age 18, unknown 37.0
2502 Female, age 75, unknown 36.5
1795 Male, age 51, unknown 35.2
Periaquaductal grey, dorsal
nTPM: 36.2
1840 Male, age 53, unknown 36.8
2850 Male, age 76, both hemispheres 36.5
1831 Male, age 72, unknown 35.7
2464 Female, age 72, unknown 35.6
Periaquaductal grey, lateral
nTPM: 36.6
2272 Male, age 74, both hemispheres 37.7
2053 Male, age 18, unknown 36.9
2140 Male, age 76, both hemispheres 35.3
Pretectal area
nTPM: 37.0
1816 Male, age 51, unknown 38.2
2007 Male, age 72, unknown 38.2
1815 Male, age 53, unknown 38.1
1817 Female, age 42, unknown 37.8
2224 Female, age 72, unknown 37.2
1944 Female, age 72, unknown 37.1
2825 Male, age 18, unknown 36.9
2273 Male, age 74, both hemispheres 36.8
2667 Female, age 75, unknown 36.5
2316 Male, age 76, right hemisphere 35.9
2407 Male, age 75, both hemispheres 34.7
Red nucleus
nTPM: 37.2
1821 Female, age 72, unknown 40.5
2503 Female, age 72, unknown 39.0
2725 Female, age 75, unknown 38.5
2823 Male, age 76, right hemisphere 37.4
1904 Male, age 53, unknown 37.3
1954 Female, age 42, unknown 37.2
2769 Male, age 72, unknown 36.8
2227 Male, age 72, unknown 36.7
1865 Male, age 51, unknown 36.6
2588 Male, age 74, left hemisphere 35.9
2785 Male, age 18, unknown 35.6
2584 Male, age 75, left hemisphere 34.5
Substantia nigra
nTPM: 37.8
1889 Female, age 72, unknown 40.2
1851 Male, age 51, unknown 39.5
2241 Male, age 72, unknown 39.5
1941 Male, age 53, unknown 38.1
2409 Female, age 72, unknown 37.8
2665 Male, age 74, both hemispheres 37.7
1916 Female, age 42, unknown 37.3
2699 Male, age 18, unknown 37.3
2590 Female, age 75, unknown 35.9
2583 Male, age 75, right hemisphere 34.2
Superior colliculus
nTPM: 36.9
2587 Male, age 74, left hemisphere 40.1
1895 Male, age 76, right hemisphere 37.8
1913 Female, age 42, unknown 37.7
2668 Female, age 75, unknown 37.4
1839 Male, age 51, unknown 37.2
2087 Female, age 72, unknown 37.1
2261 Male, age 18, unknown 36.8
1995 Male, age 72, unknown 36.2
1796 Male, age 53, unknown 35.4
2664 Male, age 75, both hemispheres 33.1
Ventral tegmental area
nTPM: 37.3
2410 Female, age 72, unknown 39.2
2218 Male, age 76, both hemispheres 37.8
1915 Female, age 42, unknown 37.3
2223 Female, age 72, unknown 36.8
2021 Male, age 53, unknown 36.6
1942 Male, age 51, unknown 36.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.5
Samples: 139

Max nTPM: 102.8
Min nTPM: 31.5
Std nTPM: 10.2
Median nTPM: 51.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 102.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 89.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 78.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 77.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 74.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 73.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 71.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 67.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 67.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 66.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 66.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.9
FF:10158-103A5 76 years, female 67.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.8
Pig sample Sample description nTPM
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 23.7
Min nTPM: 13.4
Sample A Female 13.4
Sample B Female 19.9
Sample C Male 22.2
Sample D Male 23.7
Periaqueductal gray
nTPM: 19.6
Samples: 3

Max nTPM: 20.6
Min nTPM: 17.8
Sample B Female 20.6
Sample C Male 17.8
Sample D Male 20.5
Substantia nigra
nTPM: 17.3
Samples: 4

Max nTPM: 18.8
Min nTPM: 15.6
Sample A Female 15.6
Sample B Female 16.7
Sample C Male 18.1
Sample D Male 18.8
Superior colliculi
nTPM: 18.7
Samples: 4

Max nTPM: 23.1
Min nTPM: 14.1
Sample A Female 16.3
Sample B Female 14.1
Sample C Male 23.1
Sample D Male 21.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.0
Samples: 4

Max nTPM: 78.0
Min nTPM: 65.1
Sample A Male 78.0
Sample B Male 72.9
Sample C Female 65.1
Sample D Female 71.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68076991 Antisense, RP_040929_01_C04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas project is funded
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