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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA:24.1 nTPM
GTEx:21.4 nTPM
FANTOM5:39.7 Scaled Tags Per Million
Pig:18.6 nTPM
Mouse:5.6 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.4
2481 Female, age 94, left hemisphere 27.8
2289 Male, age 61, right hemisphere 23.3
1857 Female, age 85, left hemisphere 22.5
2288 Male, age 75, left hemisphere 21.0
2290 Female, age 72, unknown 20.0
1854 Male, age 80, left hemisphere 15.2
2846 Female, age 79, unknown 13.9
1781 Male, age 74, unknown 11.7
Claustrum
nTPM: 10.4
2392 Female, age 94, both hemispheres 12.4
2491 Male, age 75, both hemispheres 12.3
2568 Male, age 61, both hemispheres 11.4
2196 Female, age 79, unknown 10.9
2198 Male, age 80, both hemispheres 10.4
2284 Female, age 91, both hemispheres 10.1
1956 Male, age 74, unknown 9.6
2645 Female, age 72, unknown 9.2
2292 Female, age 85, both hemispheres 7.0
Globus pallidus, externus
nTPM: 22.4
1996 Male, age 80, right hemisphere 30.1
2646 Male, age 61, right hemisphere 28.3
2772 Female, age 79, unknown 21.5
2395 Male, age 75, both hemispheres 19.7
2567 Female, age 72, unknown 12.6
Globus pallidus, internus
nTPM: 20.7
2037 Male, age 80, right hemisphere 25.7
2483 Female, age 94, right hemisphere 23.2
1818 Male, age 74, unknown 21.4
2287 Male, age 75, right hemisphere 20.9
2778 Female, age 91, both hemispheres 20.3
2111 Female, age 85, right hemisphere 18.6
2566 Female, age 72, unknown 14.6
Nucleus accumbens
nTPM: 14.1
2732 Male, age 80, right hemisphere 20.1
2391 Female, age 94, left hemisphere 17.3
2286 Male, age 75, left hemisphere 16.4
1806 Female, age 85, left hemisphere 15.6
2698 Female, age 72, unknown 14.4
2824 Male, age 61, right hemisphere 10.5
1856 Female, age 91, right hemisphere 9.7
1783 Male, age 74, unknown 8.7
Nucleus basalis of Meynert
nTPM: 24.1
2569 Male, age 61, both hemispheres 32.2
2393 Male, age 80, right hemisphere 25.6
2484 Female, age 94, left hemisphere 22.3
2821 Male, age 75, both hemispheres 16.4
Nucleus of the diagonal band
nTPM: 15.0
1812 Female, age 91, both hemispheres 29.7
1979 Male, age 74, unknown 16.3
2775 Male, age 80, right hemisphere 10.5
2195 Female, age 85, both hemispheres 10.3
2029 Male, age 61, right hemisphere 8.2
Olfactory tubercle
nTPM: 11.6
1846 Male, age 80, right hemisphere 16.7
2856 Male, age 75, right hemisphere 11.2
2487 Female, age 94, left hemisphere 11.1
1998 Female, age 91, both hemispheres 7.5
Putamen
nTPM: 17.6
2489 Female, age 72, unknown 24.0
2482 Female, age 94, left hemisphere 21.5
1829 Male, age 74, unknown 20.9
2647 Male, age 75, left hemisphere 18.3
2466 Female, age 79, unknown 14.2
1838 Male, age 80, right hemisphere 12.4
1937 Female, age 91, right hemisphere 11.8
Septal nuclei
nTPM: 18.4
2199 Male, age 80, right hemisphere 32.9
2629 Female, age 94, right hemisphere 23.3
2009 Female, age 91, both hemispheres 20.2
2059 Female, age 85, both hemispheres 16.8
2394 Male, age 61, left hemisphere 16.7
2031 Female, age 72, unknown 10.7
1960 Male, age 74, unknown 8.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.4
Samples: 246

Max nTPM: 52.4
Min nTPM: 4.7
Std nTPM: 7.8
Median nTPM: 19.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 52.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 46.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 43.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 39.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 39.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 37.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 37.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 36.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 36.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 36.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 36.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.2
Samples: 246

Max nTPM: 34.3
Min nTPM: 3.8
Std nTPM: 5.3
Median nTPM: 11.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 34.3
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 33.3
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 32.3
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 30.5
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 30.3
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 28.1
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 27.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 25.6
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 23.1
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 21.9
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 21.7
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Brain - Putamen (basal ganglia)
Average nTPM: 19.3
Samples: 205

Max nTPM: 50.7
Min nTPM: 5.1
Std nTPM: 7.8
Median nTPM: 18.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 50.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 45.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 41.4
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 36.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 36.3
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 35.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 34.9
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 33.9
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 33.9
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 33.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 33.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.1
FF:10164-103B2 76 years, female 23.1
Globus pallidus
Scaled Tags Per Million: 39.7
FF:10161-103A8 76 years, female 55.8
FF:10175-103C4 60 years, female 23.6
Nucleus accumbens
Scaled Tags Per Million: 27.5
FF:10037-101F1 23-56 years, mixed 27.5
Putamen
Scaled Tags Per Million: 25.3
FF:10176-103C5 60 years, female 25.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.6
Pig sample Sample description nTPM
Caudate
nTPM: 18.6
Samples: 4

Max nTPM: 21.2
Min nTPM: 16.4
Sample A Female 16.4
Sample B Female 19.2
Sample C Male 21.2
Sample D Male 17.5
Putamen
nTPM: 17.2
Samples: 4

Max nTPM: 19.0
Min nTPM: 15.5
Sample A Female 16.8
Sample B Female 15.5
Sample C Male 19.0
Sample D Male 17.5
Septum
nTPM: 17.1
Samples: 4

Max nTPM: 20.2
Min nTPM: 14.4
Sample A Female 14.4
Sample B Female 14.9
Sample C Male 20.2
Sample D Male 19.0
Ventral pallidum
nTPM: 15.7
Samples: 4

Max nTPM: 17.4
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 17.4
Sample C Male 17.3
Sample D Male 15.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.8
Samples: 4

Max nTPM: 4.8
Min nTPM: 2.4
Sample A Male 4.4
Sample B Male 4.8
Sample C Female 3.6
Sample D Female 2.4
Septum
nTPM: 5.6
Samples: 4

Max nTPM: 6.1
Min nTPM: 5.2
Sample A Male 5.8
Sample B Male 5.2
Sample C Female 6.1
Sample D Female 5.4
Ventral forebrain
nTPM: 3.8
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.3
Sample A Male 3.3
Sample B Male 4.2
Sample C Female 4.1
Sample D Female 3.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
70230945 Antisense, RP_050524_04_H04, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
70230945 Antisense, RP_050524_04_H04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.