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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:16.9 nTPM
HPA:16.9 nTPM
GTEx:19.5 nTPM
FANTOM5:26.5 Scaled Tags Per Million
Pig:4.5 nTPM
Mouse:28.7 nTPM
Allen mouse:4.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041995Antibody HPA042988
Glial cells LowNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.9
Sample id Sample description nTPM
Hippocampus
nTPM: 16.4
2529 Female, age 94, left hemisphere 17.7
2148 Female, age 91, left hemisphere 17.4
1855 Male, age 76, left hemisphere 16.8
2621 Female, age 67, right hemisphere 16.0
1911 Female, age 85, right hemisphere 15.8
1898 Male, age 80, left hemisphere 14.4
Dentate gyrus
nTPM: 16.1
2530 Female, age 94, left hemisphere 17.3
2528 Male, age 74, both hemispheres 16.4
2531 Female, age 67, both hemispheres 16.2
2246 Female, age 85, both hemispheres 15.9
1927 Female, age 91, both hemispheres 15.7
2010 Male, age 76, both hemispheres 15.4
Entorhinal gyrus
nTPM: 16.1
2613 Female, age 94, left hemisphere 17.3
2117 Female, age 91, right hemisphere 16.4
2764 Male, age 80, right hemisphere 16.3
1787 Male, age 76, left hemisphere 16.1
2686 Male, age 75, right hemisphere 15.9
1938 Female, age 85, left hemisphere 14.4
Hippocampus, CA1
nTPM: 15.9
2082 Female, age 91, right hemisphere 17.2
1873 Female, age 85, both hemispheres 15.8
2045 Male, age 76, both hemispheres 15.8
2527 Male, age 74, both hemispheres 15.3
2749 Male, age 80, left hemisphere 15.3
Hippocampus, CA2
nTPM: 15.8
2113 Female, age 91, right hemisphere 17.1
1892 Male, age 76, both hemispheres 16.5
2437 Female, age 94, left hemisphere 16.4
1940 Female, age 85, left hemisphere 15.5
1963 Male, age 80, left hemisphere 14.9
2249 Male, age 74, both hemispheres 14.4
Hippocampus, CA3
nTPM: 16.9
2620 Female, age 94, left hemisphere 20.8
2861 Female, age 67, both hemispheres 17.7
1867 Male, age 76, both hemispheres 15.9
1891 Female, age 85, both hemispheres 15.9
2137 Male, age 80, left hemisphere 15.7
2436 Male, age 74, both hemispheres 15.4
Parahippocampal cortex
nTPM: 15.3
2622 Female, age 67, right hemisphere 17.3
2692 Male, age 74, both hemispheres 16.6
2532 Female, age 72, left hemisphere 15.4
1990 Female, age 91, right hemisphere 15.2
2018 Male, age 76, both hemispheres 15.2
2245 Female, age 91, both hemispheres 15.2
2250 Female, age 67, right hemisphere 15.1
2693 Female, age 94, both hemispheres 14.7
1850 Male, age 80, both hemispheres 14.4
1933 Female, age 85, both hemispheres 14.4
Perirhinal gyrus
nTPM: 14.5
2848 Male, age 76, right hemisphere 15.8
2521 Female, age 94, right hemisphere 14.7
1794 Male, age 80, right hemisphere 14.3
1847 Female, age 91, left hemisphere 14.1
1841 Female, age 85, right hemisphere 13.7
Subiculum
nTPM: 16.2
2729 Female, age 91, right hemisphere 17.8
2619 Male, age 74, both hemispheres 17.3
2042 Male, age 76, both hemispheres 16.1
2438 Female, age 94, left hemisphere 15.7
1901 Male, age 80, both hemispheres 15.4
1977 Female, age 85, both hemispheres 15.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 19.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.5
Samples: 197

Max nTPM: 34.9
Min nTPM: 8.7
Std nTPM: 4.8
Median nTPM: 19.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 34.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 33.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 29.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 29.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 29.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 29.4
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 29.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 29.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 29.1
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 28.9
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 28.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.5
FF:10153-102I9 76 years, female 35.2
FF:10169-103B7 60 years, female 17.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.4
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.7
Sample A Female 4.9
Sample B Female 4.3
Sample C Male 4.6
Sample D Male 3.7
Entorhinal cortex
nTPM: 3.7
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.4
Sample A Female 4.1
Sample B Female 3.8
Sample C Male 3.5
Sample D Male 3.4
Subiculum
nTPM: 3.8
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.6
Sample A Female 4.2
Sample B Female 3.6
Sample C Male 3.7
Sample D Male 3.7
Ventral hippocampus
nTPM: 4.5
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.2
Sample A Female 4.4
Sample B Female 3.2
Sample C Male 5.4
Sample D Male 4.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 28.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 28.5
Samples: 4

Max nTPM: 31.9
Min nTPM: 26.1
Sample A Male 26.1
Sample B Male 29.4
Sample C Female 26.5
Sample D Female 31.9
Hippocampal formation
nTPM: 28.7
Samples: 4

Max nTPM: 30.0
Min nTPM: 25.9
Sample A Male 25.9
Sample B Male 30.0
Sample C Female 29.2
Sample D Female 29.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.8
532670 Antisense, RP_040825_01_C05, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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