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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.7 nTPM
HPA:58.7 nTPM
GTEx:47.8 nTPM
FANTOM5:24.1 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 56.3
2481 Female, age 94, left hemisphere 58.4
1781 Male, age 74, unknown 57.5
1857 Female, age 85, left hemisphere 56.6
2290 Female, age 72, unknown 56.5
2288 Male, age 75, left hemisphere 56.1
2846 Female, age 79, unknown 56.1
1854 Male, age 80, left hemisphere 55.6
2289 Male, age 61, right hemisphere 53.4
Claustrum
nTPM: 56.0
1956 Male, age 74, unknown 57.5
2491 Male, age 75, both hemispheres 57.1
2198 Male, age 80, both hemispheres 56.6
2392 Female, age 94, both hemispheres 56.2
2568 Male, age 61, both hemispheres 55.9
2645 Female, age 72, unknown 55.9
2196 Female, age 79, unknown 55.2
2284 Female, age 91, both hemispheres 55.1
2292 Female, age 85, both hemispheres 54.5
Globus pallidus, externus
nTPM: 57.6
1996 Male, age 80, right hemisphere 60.7
2772 Female, age 79, unknown 59.6
2646 Male, age 61, right hemisphere 56.5
2395 Male, age 75, both hemispheres 56.4
2567 Female, age 72, unknown 54.9
Globus pallidus, internus
nTPM: 58.7
2778 Female, age 91, both hemispheres 62.1
2483 Female, age 94, right hemisphere 60.0
2287 Male, age 75, right hemisphere 59.3
2037 Male, age 80, right hemisphere 58.8
1818 Male, age 74, unknown 57.3
2566 Female, age 72, unknown 57.0
2111 Female, age 85, right hemisphere 56.3
Nucleus accumbens
nTPM: 56.6
2286 Male, age 75, left hemisphere 58.2
2391 Female, age 94, left hemisphere 57.8
1806 Female, age 85, left hemisphere 57.6
1783 Male, age 74, unknown 57.2
2732 Male, age 80, right hemisphere 55.7
2824 Male, age 61, right hemisphere 55.7
2698 Female, age 72, unknown 55.5
1856 Female, age 91, right hemisphere 55.3
Nucleus basalis of Meynert
nTPM: 55.6
2569 Male, age 61, both hemispheres 57.7
2484 Female, age 94, left hemisphere 55.6
2821 Male, age 75, both hemispheres 55.1
2393 Male, age 80, right hemisphere 53.9
Nucleus of the diagonal band
nTPM: 56.5
1812 Female, age 91, both hemispheres 57.9
2775 Male, age 80, right hemisphere 57.2
2029 Male, age 61, right hemisphere 57.1
1979 Male, age 74, unknown 55.2
2195 Female, age 85, both hemispheres 55.0
Olfactory tubercle
nTPM: 56.2
1846 Male, age 80, right hemisphere 57.1
1998 Female, age 91, both hemispheres 56.8
2856 Male, age 75, right hemisphere 56.5
2487 Female, age 94, left hemisphere 54.6
Putamen
nTPM: 55.8
2482 Female, age 94, left hemisphere 58.0
2647 Male, age 75, left hemisphere 56.7
2466 Female, age 79, unknown 56.5
1937 Female, age 91, right hemisphere 56.1
2489 Female, age 72, unknown 55.4
1829 Male, age 74, unknown 54.3
1838 Male, age 80, right hemisphere 53.3
Septal nuclei
nTPM: 56.2
1960 Male, age 74, unknown 58.0
2031 Female, age 72, unknown 57.6
2059 Female, age 85, both hemispheres 56.5
2009 Female, age 91, both hemispheres 55.9
2199 Male, age 80, right hemisphere 55.9
2394 Male, age 61, left hemisphere 54.9
2629 Female, age 94, right hemisphere 54.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.9
Samples: 246

Max nTPM: 112.3
Min nTPM: 19.5
Std nTPM: 12.6
Median nTPM: 41.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 112.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 97.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 94.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 90.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 88.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 78.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 78.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 76.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 73.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 71.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 69.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.7
Samples: 246

Max nTPM: 122.0
Min nTPM: 18.7
Std nTPM: 13.1
Median nTPM: 40.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 122.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 113.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 87.3
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 73.0
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 71.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 70.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 69.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 68.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 68.9
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 67.2
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 65.5
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Brain - Putamen (basal ganglia)
Average nTPM: 47.8
Samples: 205

Max nTPM: 133.6
Min nTPM: 25.8
Std nTPM: 11.7
Median nTPM: 45.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 133.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 84.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 81.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 73.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 73.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 71.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 68.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 68.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 68.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 67.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 66.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 24.1
FF:10164-103B2 76 years, female 24.1
Globus pallidus
Scaled Tags Per Million: 18.1
FF:10161-103A8 76 years, female 22.9
FF:10175-103C4 60 years, female 13.4
Nucleus accumbens
Scaled Tags Per Million: 17.3
FF:10037-101F1 23-56 years, mixed 17.3
Putamen
Scaled Tags Per Million: 20.4
FF:10176-103C5 60 years, female 20.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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