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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:39.9 nTPM
HPA:39.9 nTPM
GTEx:32.3 nTPM
FANTOM5:68.5 Scaled Tags Per Million
Pig:82.3 nTPM
Mouse:57.6 nTPM
Allen mouse:7.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006461Antibody HPA056108Antibody CAB005192Antibody CAB015417
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detectedNot detected






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.9
Sample id Sample description nTPM
Hippocampus
nTPM: 14.3
2148 Female, age 91, left hemisphere 26.4
2621 Female, age 67, right hemisphere 18.9
1911 Female, age 85, right hemisphere 17.5
1898 Male, age 80, left hemisphere 17.3
1855 Male, age 76, left hemisphere 6.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 39.9
2010 Male, age 76, both hemispheres 63.2
2528 Male, age 74, both hemispheres 52.8
2531 Female, age 67, both hemispheres 46.4
2530 Female, age 94, left hemisphere 38.7
1927 Female, age 91, both hemispheres 19.3
2246 Female, age 85, both hemispheres 18.7
Entorhinal gyrus
nTPM: 21.6
2764 Male, age 80, right hemisphere 47.0
2613 Female, age 94, left hemisphere 35.4
2686 Male, age 75, right hemisphere 27.3
1787 Male, age 76, left hemisphere 14.0
1938 Female, age 85, left hemisphere 6.1
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 23.9
2045 Male, age 76, both hemispheres 61.3
1873 Female, age 85, both hemispheres 20.9
2082 Female, age 91, right hemisphere 13.4
2527 Male, age 74, both hemispheres 12.6
2749 Male, age 80, left hemisphere 11.2
Hippocampus, CA2
nTPM: 16.3
2249 Male, age 74, both hemispheres 41.1
1963 Male, age 80, left hemisphere 33.8
2437 Female, age 94, left hemisphere 12.9
1940 Female, age 85, left hemisphere 8.8
2113 Female, age 91, right hemisphere 1.0
1892 Male, age 76, both hemispheres 0.0
Hippocampus, CA3
nTPM: 22.0
2861 Female, age 67, both hemispheres 61.5
2620 Female, age 94, left hemisphere 60.3
1891 Female, age 85, both hemispheres 10.6
1867 Male, age 76, both hemispheres 0.0
2137 Male, age 80, left hemisphere 0.0
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 14.6
2018 Male, age 76, both hemispheres 41.4
2622 Female, age 67, right hemisphere 34.3
1990 Female, age 91, right hemisphere 22.7
1933 Female, age 85, both hemispheres 15.5
2692 Male, age 74, both hemispheres 13.8
2250 Female, age 67, right hemisphere 11.7
2532 Female, age 72, left hemisphere 6.5
1850 Male, age 80, both hemispheres 0.0
2245 Female, age 91, both hemispheres 0.0
2693 Female, age 94, both hemispheres 0.0
Perirhinal gyrus
nTPM: 1.6
1794 Male, age 80, right hemisphere 8.2
1841 Female, age 85, right hemisphere 0.0
1847 Female, age 91, left hemisphere 0.0
2521 Female, age 94, right hemisphere 0.0
2848 Male, age 76, right hemisphere 0.0
Subiculum
nTPM: 15.1
2042 Male, age 76, both hemispheres 39.0
2729 Female, age 91, right hemisphere 17.6
1977 Female, age 85, both hemispheres 17.2
2619 Male, age 74, both hemispheres 16.8
1901 Male, age 80, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 32.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.3
Samples: 197

Max nTPM: 76.6
Min nTPM: 8.5
Std nTPM: 11.0
Median nTPM: 31.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 76.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 67.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 65.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 57.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 56.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 56.2
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 55.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 54.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 53.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 52.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 51.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.5
FF:10153-102I9 76 years, female 81.7
FF:10169-103B7 60 years, female 55.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 82.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 69.3
Samples: 4

Max nTPM: 85.6
Min nTPM: 47.6
Sample A Female 85.6
Sample B Female 74.2
Sample C Male 69.9
Sample D Male 47.6
Entorhinal cortex
nTPM: 71.5
Samples: 4

Max nTPM: 87.1
Min nTPM: 61.9
Sample A Female 73.4
Sample B Female 61.9
Sample C Male 87.1
Sample D Male 63.5
Subiculum
nTPM: 78.6
Samples: 4

Max nTPM: 101.8
Min nTPM: 61.6
Sample A Female 101.8
Sample B Female 69.1
Sample C Male 81.7
Sample D Male 61.6
Ventral hippocampus
nTPM: 82.3
Samples: 4

Max nTPM: 118.9
Min nTPM: 56.9
Sample A Female 74.9
Sample B Female 56.9
Sample C Male 118.9
Sample D Male 78.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 57.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 57.6
Samples: 4

Max nTPM: 70.8
Min nTPM: 46.1
Sample A Male 59.7
Sample B Male 53.9
Sample C Female 46.1
Sample D Female 70.8
Hippocampal formation
nTPM: 51.1
Samples: 4

Max nTPM: 60.1
Min nTPM: 41.4
Sample A Male 41.4
Sample B Male 55.9
Sample C Female 60.1
Sample D Female 46.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.5
68845341 Antisense, RP_050224_01_F03, Mouse strain C57BL/6J (56 days, male) 9.7
74425543 Antisense, RP_051214_02_G05, Mouse strain C57BL/6J (56 days, male) 7.7
100144507 Antisense, RP_110421_03_E12, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.