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SF3B5
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:126.2 nTPM
HPA:126.2 nTPM
GTEx:97.3 nTPM
FANTOM5:73.3 Scaled Tags Per Million
Mouse:6.2 nTPM
Allen mouse:10.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA054408
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 126.2
Sample id Sample description nTPM
Hippocampus
nTPM: 121.0
1898 Male, age 80, left hemisphere 126.2
2621 Female, age 67, right hemisphere 125.3
1855 Male, age 76, left hemisphere 123.8
2529 Female, age 94, left hemisphere 120.1
2148 Female, age 91, left hemisphere 115.9
1911 Female, age 85, right hemisphere 114.6
Dentate gyrus
nTPM: 120.8
2010 Male, age 76, both hemispheres 134.9
2530 Female, age 94, left hemisphere 122.3
1927 Female, age 91, both hemispheres 118.7
2528 Male, age 74, both hemispheres 118.2
2246 Female, age 85, both hemispheres 116.7
2531 Female, age 67, both hemispheres 113.9
Entorhinal gyrus
nTPM: 116.5
2764 Male, age 80, right hemisphere 120.4
2117 Female, age 91, right hemisphere 119.1
1787 Male, age 76, left hemisphere 118.9
1938 Female, age 85, left hemisphere 117.3
2686 Male, age 75, right hemisphere 113.2
2613 Female, age 94, left hemisphere 110.0
Hippocampus, CA1
nTPM: 126.2
2749 Male, age 80, left hemisphere 151.5
1873 Female, age 85, both hemispheres 124.1
2527 Male, age 74, both hemispheres 120.4
2045 Male, age 76, both hemispheres 119.6
2082 Female, age 91, right hemisphere 115.3
Hippocampus, CA2
nTPM: 121.1
1963 Male, age 80, left hemisphere 131.8
2249 Male, age 74, both hemispheres 125.7
1892 Male, age 76, both hemispheres 123.2
2113 Female, age 91, right hemisphere 116.5
2437 Female, age 94, left hemisphere 115.0
1940 Female, age 85, left hemisphere 114.5
Hippocampus, CA3
nTPM: 118.5
2436 Male, age 74, both hemispheres 125.2
2137 Male, age 80, left hemisphere 122.3
1867 Male, age 76, both hemispheres 121.2
1891 Female, age 85, both hemispheres 114.4
2861 Female, age 67, both hemispheres 114.2
2620 Female, age 94, left hemisphere 113.9
Parahippocampal cortex
nTPM: 115.0
2532 Female, age 72, left hemisphere 118.4
2245 Female, age 91, both hemispheres 117.4
1990 Female, age 91, right hemisphere 117.1
1850 Male, age 80, both hemispheres 116.5
1933 Female, age 85, both hemispheres 116.1
2018 Male, age 76, both hemispheres 116.0
2250 Female, age 67, right hemisphere 115.5
2692 Male, age 74, both hemispheres 113.2
2622 Female, age 67, right hemisphere 109.9
2693 Female, age 94, both hemispheres 109.9
Perirhinal gyrus
nTPM: 116.7
1794 Male, age 80, right hemisphere 120.0
1847 Female, age 91, left hemisphere 119.3
1841 Female, age 85, right hemisphere 116.4
2848 Male, age 76, right hemisphere 114.0
2521 Female, age 94, right hemisphere 113.6
Subiculum
nTPM: 117.4
1977 Female, age 85, both hemispheres 118.6
2042 Male, age 76, both hemispheres 118.4
2619 Male, age 74, both hemispheres 118.3
2438 Female, age 94, left hemisphere 117.6
1901 Male, age 80, both hemispheres 117.3
2729 Female, age 91, right hemisphere 114.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 97.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 97.3
Samples: 197

Max nTPM: 205.1
Min nTPM: 55.7
Std nTPM: 23.7
Median nTPM: 91.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 205.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 180.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 171.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 162.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 153.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 153.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 150.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 149.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 147.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 147.2
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 147.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 73.3
FF:10169-103B7 60 years, female 86.8
FF:10153-102I9 76 years, female 59.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 6.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 6.2
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.3
Sample A Male 5.8
Sample B Male 7.4
Sample C Female 6.1
Sample D Female 5.3
Hippocampal formation
nTPM: 6.1
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.6
Sample A Male 5.6
Sample B Male 6.4
Sample C Female 5.6
Sample D Female 6.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.8
69059832 Antisense, RP_050317_04_B07, Mouse strain C57BL/6J (56 days, male) 10.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.