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SF3B5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:122.9 nTPM
HPA:122.9 nTPM
GTEx:102.6 nTPM
FANTOM5:71.6 Scaled Tags Per Million
Mouse:2.3 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 122.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 118.7
2019 Male, age 18, unknown 123.8
2411 Female, age 72, unknown 122.7
2828 Female, age 72, unknown 119.8
1870 Female, age 42, unknown 118.6
2586 Male, age 75, left hemisphere 118.6
1830 Male, age 51, unknown 118.2
1827 Male, age 72, unknown 117.9
1833 Male, age 53, unknown 116.7
2219 Male, age 76, both hemispheres 115.7
2666 Male, age 74, left hemisphere 114.8
Dorsal raphe nucleus
nTPM: 121.3
2298 Female, age 72, unknown 124.4
2047 Male, age 72, unknown 122.9
1828 Male, age 53, unknown 122.3
2750 Male, age 76, both hemispheres 121.4
2016 Female, age 72, unknown 115.6
Inferior colliculus
nTPM: 117.2
2097 Female, age 72, unknown 120.2
1848 Female, age 42, unknown 117.9
1890 Male, age 53, unknown 116.7
2849 Male, age 72, unknown 113.9
Median raphe nucleus
nTPM: 121.4
2220 Male, age 76, midline 121.4
Pedunculopontine tegmental nucleus
nTPM: 119.3
2334 Male, age 80, both hemispheres 123.3
2338 Male, age 61, both hemispheres 119.0
1921 Female, age 85, both hemispheres 115.6
Periaquaductal grey, anterior
nTPM: 119.3
2502 Female, age 75, unknown 122.0
1947 Male, age 18, unknown 119.0
1795 Male, age 51, unknown 116.9
Periaquaductal grey, dorsal
nTPM: 116.1
2850 Male, age 76, both hemispheres 116.6
1840 Male, age 53, unknown 116.5
2464 Female, age 72, unknown 116.2
1831 Male, age 72, unknown 115.0
Periaquaductal grey, lateral
nTPM: 116.3
2272 Male, age 74, both hemispheres 119.3
2140 Male, age 76, both hemispheres 115.3
2053 Male, age 18, unknown 114.5
Pretectal area
nTPM: 119.4
1817 Female, age 42, unknown 127.4
2007 Male, age 72, unknown 125.0
2273 Male, age 74, both hemispheres 121.8
1815 Male, age 53, unknown 120.6
1944 Female, age 72, unknown 120.6
1816 Male, age 51, unknown 120.4
2667 Female, age 75, unknown 118.2
2224 Female, age 72, unknown 116.9
2825 Male, age 18, unknown 114.8
2407 Male, age 75, both hemispheres 114.5
2316 Male, age 76, right hemisphere 113.1
Red nucleus
nTPM: 122.9
1865 Male, age 51, unknown 126.3
1821 Female, age 72, unknown 126.0
2785 Male, age 18, unknown 125.5
1954 Female, age 42, unknown 125.1
1904 Male, age 53, unknown 124.3
2503 Female, age 72, unknown 123.5
2725 Female, age 75, unknown 122.5
2227 Male, age 72, unknown 122.4
2769 Male, age 72, unknown 122.0
2588 Male, age 74, left hemisphere 121.2
2823 Male, age 76, right hemisphere 119.4
2584 Male, age 75, left hemisphere 116.1
Substantia nigra
nTPM: 120.9
1916 Female, age 42, unknown 126.6
1889 Female, age 72, unknown 124.6
1851 Male, age 51, unknown 123.7
1941 Male, age 53, unknown 121.4
2665 Male, age 74, both hemispheres 120.8
2409 Female, age 72, unknown 120.4
2241 Male, age 72, unknown 119.7
2590 Female, age 75, unknown 119.5
2699 Male, age 18, unknown 118.2
2583 Male, age 75, right hemisphere 114.4
Superior colliculus
nTPM: 118.0
2587 Male, age 74, left hemisphere 124.4
2261 Male, age 18, unknown 120.0
1796 Male, age 53, unknown 118.4
1995 Male, age 72, unknown 118.2
1913 Female, age 42, unknown 118.1
1839 Male, age 51, unknown 117.6
2668 Female, age 75, unknown 117.5
2087 Female, age 72, unknown 116.9
1895 Male, age 76, right hemisphere 116.8
2664 Male, age 75, both hemispheres 111.9
Ventral tegmental area
nTPM: 122.2
2410 Female, age 72, unknown 128.8
2223 Female, age 72, unknown 123.0
2218 Male, age 76, both hemispheres 122.9
1915 Female, age 42, unknown 121.6
2021 Male, age 53, unknown 118.8
1942 Male, age 51, unknown 118.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 102.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 102.6
Samples: 139

Max nTPM: 194.2
Min nTPM: 62.2
Std nTPM: 20.8
Median nTPM: 98.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 194.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 168.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 158.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 156.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 156.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 153.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 148.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 146.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 143.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 140.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 133.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 71.6
FF:10158-103A5 76 years, female 71.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.3
Samples: 4

Max nTPM: 3.2
Min nTPM: 1.7
Sample A Male 3.2
Sample B Male 2.2
Sample C Female 1.7
Sample D Female 2.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
69059832 Antisense, RP_050317_04_B07, Mouse strain C57BL/6J (56 days, male) 4.7

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The Human Protein Atlas

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