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VSTM2A
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.9 nTPM
HPA:9.9 nTPM
GTEx:23.5 nTPM
FANTOM5:172.1 Scaled Tags Per Million
Pig:76.4 nTPM
Mouse:190.3 nTPM
Allen mouse:5.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.4
2288 Male, age 75, left hemisphere 3.9
1857 Female, age 85, left hemisphere 3.4
2290 Female, age 72, unknown 2.0
1854 Male, age 80, left hemisphere 1.9
1781 Male, age 74, unknown 0.0
2289 Male, age 61, right hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 0.0
1956 Male, age 74, unknown 0.0
2196 Female, age 79, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2491 Male, age 75, both hemispheres 0.0
2568 Male, age 61, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 4.6
1856 Female, age 91, right hemisphere 18.8
2698 Female, age 72, unknown 6.6
1806 Female, age 85, left hemisphere 5.5
2824 Male, age 61, right hemisphere 5.0
2286 Male, age 75, left hemisphere 0.7
1783 Male, age 74, unknown 0.1
2391 Female, age 94, left hemisphere 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 9.9
1979 Male, age 74, unknown 19.9
2195 Female, age 85, both hemispheres 9.2
1812 Female, age 91, both hemispheres 8.0
2029 Male, age 61, right hemisphere 7.3
2775 Male, age 80, right hemisphere 5.0
Olfactory tubercle
nTPM: 5.6
1846 Male, age 80, right hemisphere 8.9
2487 Female, age 94, left hemisphere 6.2
2856 Male, age 75, right hemisphere 5.2
1998 Female, age 91, both hemispheres 2.0
Putamen
nTPM: 1.2
1838 Male, age 80, right hemisphere 4.8
1937 Female, age 91, right hemisphere 3.6
1829 Male, age 74, unknown 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 6.8
2031 Female, age 72, unknown 11.5
2629 Female, age 94, right hemisphere 10.7
2009 Female, age 91, both hemispheres 9.3
2199 Male, age 80, right hemisphere 6.9
1960 Male, age 74, unknown 6.0
2059 Female, age 85, both hemispheres 1.9
2394 Male, age 61, left hemisphere 1.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.7
Samples: 246

Max nTPM: 65.8
Min nTPM: 1.1
Std nTPM: 9.7
Median nTPM: 13.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 65.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 58.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 38.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 37.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 35.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 35.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 35.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 34.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 34.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 33.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 33.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.5
Samples: 246

Max nTPM: 65.5
Min nTPM: 0.8
Std nTPM: 14.3
Median nTPM: 22.3
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 65.5
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 61.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 56.7
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 56.0
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 55.2
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 55.0
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 54.5
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 54.1
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 53.9
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 52.8
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 52.4
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Brain - Putamen (basal ganglia)
Average nTPM: 10.1
Samples: 205

Max nTPM: 32.1
Min nTPM: 0.3
Std nTPM: 7.1
Median nTPM: 8.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 32.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 32.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 29.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 27.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 26.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 25.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 25.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 24.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 24.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 24.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 24.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 172.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 170.9
FF:10164-103B2 76 years, female 170.9
Globus pallidus
Scaled Tags Per Million: 38.3
FF:10175-103C4 60 years, female 59.2
FF:10161-103A8 76 years, female 17.5
Nucleus accumbens
Scaled Tags Per Million: 146.3
FF:10037-101F1 23-56 years, mixed 146.3
Putamen
Scaled Tags Per Million: 172.1
FF:10176-103C5 60 years, female 172.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 76.4
Pig sample Sample description nTPM
Caudate
nTPM: 46.9
Samples: 4

Max nTPM: 51.5
Min nTPM: 40.8
Sample A Female 51.5
Sample B Female 47.2
Sample C Male 48.2
Sample D Male 40.8
Putamen
nTPM: 48.3
Samples: 4

Max nTPM: 57.2
Min nTPM: 34.5
Sample A Female 56.9
Sample B Female 34.5
Sample C Male 57.2
Sample D Male 44.6
Septum
nTPM: 76.4
Samples: 4

Max nTPM: 86.4
Min nTPM: 72.2
Sample A Female 74.2
Sample B Female 72.2
Sample C Male 86.4
Sample D Male 72.9
Ventral pallidum
nTPM: 67.9
Samples: 4

Max nTPM: 96.2
Min nTPM: 49.2
Sample A Female 58.5
Sample B Female 67.5
Sample C Male 96.2
Sample D Male 49.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 190.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 86.3
Samples: 4

Max nTPM: 93.0
Min nTPM: 78.9
Sample A Male 86.9
Sample B Male 86.3
Sample C Female 78.9
Sample D Female 93.0
Septum
nTPM: 190.3
Samples: 4

Max nTPM: 208.8
Min nTPM: 169.4
Sample A Male 169.4
Sample B Male 208.8
Sample C Female 193.0
Sample D Female 189.9
Ventral forebrain
nTPM: 137.0
Samples: 4

Max nTPM: 163.4
Min nTPM: 121.4
Sample A Male 121.4
Sample B Male 163.4
Sample C Female 140.0
Sample D Female 123.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.7
71836843 Antisense, RP_051017_02_C06, Mouse strain C57BL/6J (56 days, male) 4.3
68157400 Antisense, RP_041116_02_E03, Mouse strain C57BL/6J (56 days, male) 1.1
Pallidum
Expression energy: 5.1
71836843 Antisense, RP_051017_02_C06, Mouse strain C57BL/6J (56 days, male) 8.1
68157400 Antisense, RP_041116_02_E03, Mouse strain C57BL/6J (56 days, male) 2.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.