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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.6 nTPM
HPA:20.6 nTPM
GTEx:20.8 nTPM
FANTOM5:25.3 Scaled Tags Per Million
Pig:12.4 nTPM
Mouse:23.9 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.5
2586 Male, age 75, left hemisphere 20.2
1827 Male, age 72, unknown 20.1
1830 Male, age 51, unknown 19.8
2219 Male, age 76, both hemispheres 19.6
1833 Male, age 53, unknown 19.5
2411 Female, age 72, unknown 19.5
2828 Female, age 72, unknown 19.5
1870 Female, age 42, unknown 19.3
2019 Male, age 18, unknown 18.7
2666 Male, age 74, left hemisphere 18.7
Dorsal raphe nucleus
nTPM: 19.4
2298 Female, age 72, unknown 20.1
2016 Female, age 72, unknown 20.0
1828 Male, age 53, unknown 19.5
2047 Male, age 72, unknown 18.8
2750 Male, age 76, both hemispheres 18.8
Inferior colliculus
nTPM: 19.8
2097 Female, age 72, unknown 20.0
2849 Male, age 72, unknown 19.9
1890 Male, age 53, unknown 19.6
1848 Female, age 42, unknown 19.5
Median raphe nucleus
nTPM: 20.1
2220 Male, age 76, midline 20.1
Pedunculopontine tegmental nucleus
nTPM: 20.6
2338 Male, age 61, both hemispheres 21.5
1921 Female, age 85, both hemispheres 20.3
2334 Male, age 80, both hemispheres 19.9
Periaquaductal grey, anterior
nTPM: 19.3
1795 Male, age 51, unknown 19.6
2502 Female, age 75, unknown 19.3
1947 Male, age 18, unknown 19.2
Periaquaductal grey, dorsal
nTPM: 19.4
2850 Male, age 76, both hemispheres 20.4
1831 Male, age 72, unknown 19.7
1840 Male, age 53, unknown 19.3
2464 Female, age 72, unknown 18.3
Periaquaductal grey, lateral
nTPM: 19.8
2272 Male, age 74, both hemispheres 20.6
2053 Male, age 18, unknown 19.7
2140 Male, age 76, both hemispheres 19.3
Pretectal area
nTPM: 19.6
1816 Male, age 51, unknown 20.2
2407 Male, age 75, both hemispheres 20.2
2825 Male, age 18, unknown 20.1
1817 Female, age 42, unknown 20.0
1944 Female, age 72, unknown 20.0
2273 Male, age 74, both hemispheres 19.9
1815 Male, age 53, unknown 19.8
2667 Female, age 75, unknown 19.5
2007 Male, age 72, unknown 19.0
2224 Female, age 72, unknown 18.6
2316 Male, age 76, right hemisphere 18.5
Red nucleus
nTPM: 19.7
2725 Female, age 75, unknown 20.6
2823 Male, age 76, right hemisphere 20.4
2584 Male, age 75, left hemisphere 19.8
2769 Male, age 72, unknown 19.8
2785 Male, age 18, unknown 19.8
1865 Male, age 51, unknown 19.6
2227 Male, age 72, unknown 19.6
1821 Female, age 72, unknown 19.4
2503 Female, age 72, unknown 19.4
2588 Male, age 74, left hemisphere 19.4
1904 Male, age 53, unknown 19.3
1954 Female, age 42, unknown 19.0
Substantia nigra
nTPM: 19.6
1889 Female, age 72, unknown 20.6
1916 Female, age 42, unknown 20.3
2699 Male, age 18, unknown 20.2
2665 Male, age 74, both hemispheres 20.0
1941 Male, age 53, unknown 19.7
1851 Male, age 51, unknown 19.6
2241 Male, age 72, unknown 19.5
2590 Female, age 75, unknown 19.3
2583 Male, age 75, right hemisphere 18.9
2409 Female, age 72, unknown 18.2
Superior colliculus
nTPM: 19.4
1796 Male, age 53, unknown 20.0
2664 Male, age 75, both hemispheres 19.9
1995 Male, age 72, unknown 19.6
2587 Male, age 74, left hemisphere 19.6
1895 Male, age 76, right hemisphere 19.5
2261 Male, age 18, unknown 19.5
1913 Female, age 42, unknown 19.1
2668 Female, age 75, unknown 19.0
2087 Female, age 72, unknown 18.9
1839 Male, age 51, unknown 18.8
Ventral tegmental area
nTPM: 19.6
2218 Male, age 76, both hemispheres 20.9
1915 Female, age 42, unknown 20.4
2021 Male, age 53, unknown 19.3
1942 Male, age 51, unknown 19.2
2223 Female, age 72, unknown 19.2
2410 Female, age 72, unknown 18.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.8
Samples: 139

Max nTPM: 32.3
Min nTPM: 11.3
Std nTPM: 4.0
Median nTPM: 20.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 32.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 31.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 30.5
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 30.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 30.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 29.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 29.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 27.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 26.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 26.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.3
FF:10158-103A5 76 years, female 25.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.4
Pig sample Sample description nTPM
Midbrain
nTPM: 12.4
Samples: 4

Max nTPM: 16.8
Min nTPM: 10.5
Sample A Female 16.8
Sample B Female 11.4
Sample C Male 10.5
Sample D Male 10.8
Periaqueductal gray
nTPM: 10.7
Samples: 3

Max nTPM: 11.3
Min nTPM: 10.0
Sample B Female 11.3
Sample C Male 10.7
Sample D Male 10.0
Substantia nigra
nTPM: 11.7
Samples: 4

Max nTPM: 13.3
Min nTPM: 9.9
Sample A Female 13.3
Sample B Female 9.9
Sample C Male 11.1
Sample D Male 12.6
Superior colliculi
nTPM: 11.8
Samples: 4

Max nTPM: 13.9
Min nTPM: 9.1
Sample A Female 13.9
Sample B Female 9.1
Sample C Male 12.3
Sample D Male 11.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.9
Samples: 4

Max nTPM: 26.7
Min nTPM: 22.2
Sample A Male 26.7
Sample B Male 22.2
Sample C Female 22.9
Sample D Female 23.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
69113895 Antisense, RP_050317_01_A03, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.