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LONRF2
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:26.7 nTPM
HPA:26.7 nTPM
GTEx:11.2 nTPM
FANTOM5:37.2 Scaled Tags Per Million
Pig:21.2 nTPM
Mouse:62.8 nTPM
Allen mouse:9.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034595Antibody HPA057366
Glial cells Not detectedNot detected
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 26.7
Sample id Sample description nTPM
Hippocampus
nTPM: 5.7
1898 Male, age 80, left hemisphere 17.9
1855 Male, age 76, left hemisphere 8.7
2621 Female, age 67, right hemisphere 4.8
2148 Female, age 91, left hemisphere 3.1
1911 Female, age 85, right hemisphere 0.0
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 9.5
1927 Female, age 91, both hemispheres 19.9
2531 Female, age 67, both hemispheres 11.8
2010 Male, age 76, both hemispheres 11.4
2246 Female, age 85, both hemispheres 7.4
2528 Male, age 74, both hemispheres 6.3
2530 Female, age 94, left hemisphere 0.0
Entorhinal gyrus
nTPM: 7.6
2764 Male, age 80, right hemisphere 16.1
2613 Female, age 94, left hemisphere 10.7
1938 Female, age 85, left hemisphere 9.7
1787 Male, age 76, left hemisphere 6.4
2686 Male, age 75, right hemisphere 2.6
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 15.4
2749 Male, age 80, left hemisphere 26.4
2045 Male, age 76, both hemispheres 24.3
2082 Female, age 91, right hemisphere 12.5
1873 Female, age 85, both hemispheres 10.2
2527 Male, age 74, both hemispheres 3.6
Hippocampus, CA2
nTPM: 7.9
1892 Male, age 76, both hemispheres 19.8
1963 Male, age 80, left hemisphere 15.7
2113 Female, age 91, right hemisphere 5.1
1940 Female, age 85, left hemisphere 4.8
2437 Female, age 94, left hemisphere 1.5
2249 Male, age 74, both hemispheres 0.5
Hippocampus, CA3
nTPM: 14.8
2137 Male, age 80, left hemisphere 23.8
2620 Female, age 94, left hemisphere 23.4
1867 Male, age 76, both hemispheres 19.0
2436 Male, age 74, both hemispheres 11.5
2861 Female, age 67, both hemispheres 8.3
1891 Female, age 85, both hemispheres 2.7
Parahippocampal cortex
nTPM: 10.1
2693 Female, age 94, both hemispheres 21.3
1850 Male, age 80, both hemispheres 17.6
1933 Female, age 85, both hemispheres 13.0
2250 Female, age 67, right hemisphere 12.8
2018 Male, age 76, both hemispheres 9.0
2245 Female, age 91, both hemispheres 8.9
1990 Female, age 91, right hemisphere 8.6
2532 Female, age 72, left hemisphere 6.6
2622 Female, age 67, right hemisphere 3.0
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 26.7
2521 Female, age 94, right hemisphere 41.9
1847 Female, age 91, left hemisphere 34.0
1794 Male, age 80, right hemisphere 26.2
1841 Female, age 85, right hemisphere 18.4
2848 Male, age 76, right hemisphere 12.8
Subiculum
nTPM: 3.4
1977 Female, age 85, both hemispheres 12.3
1901 Male, age 80, both hemispheres 7.7
2729 Female, age 91, right hemisphere 0.3
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0
2619 Male, age 74, both hemispheres 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.2
Samples: 197

Max nTPM: 32.8
Min nTPM: 2.6
Std nTPM: 5.9
Median nTPM: 10.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 32.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 30.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 30.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 26.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 23.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 23.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 22.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 22.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 22.4
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 22.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 22.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 37.2
FF:10153-102I9 76 years, female 38.9
FF:10169-103B7 60 years, female 35.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 17.6
Samples: 4

Max nTPM: 20.7
Min nTPM: 14.7
Sample A Female 20.7
Sample B Female 19.7
Sample C Male 14.7
Sample D Male 15.1
Entorhinal cortex
nTPM: 19.9
Samples: 4

Max nTPM: 22.7
Min nTPM: 17.6
Sample A Female 21.2
Sample B Female 17.6
Sample C Male 22.7
Sample D Male 18.2
Subiculum
nTPM: 21.2
Samples: 4

Max nTPM: 30.1
Min nTPM: 16.1
Sample A Female 30.1
Sample B Female 18.7
Sample C Male 19.8
Sample D Male 16.1
Ventral hippocampus
nTPM: 19.4
Samples: 4

Max nTPM: 22.7
Min nTPM: 15.6
Sample A Female 19.5
Sample B Female 15.6
Sample C Male 22.7
Sample D Male 19.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 62.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 62.8
Samples: 4

Max nTPM: 83.5
Min nTPM: 55.2
Sample A Male 56.2
Sample B Male 55.2
Sample C Female 56.4
Sample D Female 83.5
Hippocampal formation
nTPM: 51.2
Samples: 4

Max nTPM: 60.1
Min nTPM: 41.4
Sample A Male 45.9
Sample B Male 57.4
Sample C Female 60.1
Sample D Female 41.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.6
70596029 Antisense, RP_050628_03_H06, Mouse strain C57BL/6J (56 days, male) 11.5
74988755 Antisense, RP_060315_05_G11, Mouse strain C57BL/6J (56 days, male) 7.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.