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SMAGP
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.9 nTPM
HPA:2.9 nTPM
GTEx:2.9 nTPM
FANTOM5:3.5 Scaled Tags Per Million
Mouse:1.9 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2.6
1830 Male, age 51, unknown 3.2
2219 Male, age 76, both hemispheres 2.9
2019 Male, age 18, unknown 2.8
2666 Male, age 74, left hemisphere 2.8
2411 Female, age 72, unknown 2.7
1833 Male, age 53, unknown 2.6
1827 Male, age 72, unknown 2.3
2586 Male, age 75, left hemisphere 2.3
2828 Female, age 72, unknown 2.1
1870 Female, age 42, unknown 1.9
Dorsal raphe nucleus
nTPM: 2.3
2016 Female, age 72, unknown 2.5
1828 Male, age 53, unknown 2.3
2047 Male, age 72, unknown 2.3
2750 Male, age 76, both hemispheres 2.3
2298 Female, age 72, unknown 1.9
Inferior colliculus
nTPM: 2.4
1890 Male, age 53, unknown 2.7
1848 Female, age 42, unknown 2.4
2097 Female, age 72, unknown 2.2
2849 Male, age 72, unknown 2.2
Median raphe nucleus
nTPM: 2.2
2220 Male, age 76, midline 2.2
Pedunculopontine tegmental nucleus
nTPM: 2.8
2338 Male, age 61, both hemispheres 2.9
1921 Female, age 85, both hemispheres 2.7
2334 Male, age 80, both hemispheres 2.7
Periaquaductal grey, anterior
nTPM: 2.2
1947 Male, age 18, unknown 2.3
2502 Female, age 75, unknown 2.2
1795 Male, age 51, unknown 2.1
Periaquaductal grey, dorsal
nTPM: 2.4
2850 Male, age 76, both hemispheres 2.6
1831 Male, age 72, unknown 2.4
2464 Female, age 72, unknown 2.4
1840 Male, age 53, unknown 2.2
Periaquaductal grey, lateral
nTPM: 2.4
2053 Male, age 18, unknown 2.7
2272 Male, age 74, both hemispheres 2.5
2140 Male, age 76, both hemispheres 2.0
Pretectal area
nTPM: 2.9
1817 Female, age 42, unknown 4.7
1944 Female, age 72, unknown 3.6
1816 Male, age 51, unknown 3.3
1815 Male, age 53, unknown 3.0
2007 Male, age 72, unknown 2.9
2273 Male, age 74, both hemispheres 2.5
2224 Female, age 72, unknown 2.4
2316 Male, age 76, right hemisphere 2.4
2407 Male, age 75, both hemispheres 2.3
2667 Female, age 75, unknown 2.3
2825 Male, age 18, unknown 2.2
Red nucleus
nTPM: 2.7
2588 Male, age 74, left hemisphere 3.1
2823 Male, age 76, right hemisphere 3.0
1904 Male, age 53, unknown 2.8
2227 Male, age 72, unknown 2.7
2725 Female, age 75, unknown 2.7
2785 Male, age 18, unknown 2.7
1954 Female, age 42, unknown 2.6
2769 Male, age 72, unknown 2.6
1821 Female, age 72, unknown 2.5
1865 Male, age 51, unknown 2.4
2503 Female, age 72, unknown 2.4
2584 Male, age 75, left hemisphere 2.4
Substantia nigra
nTPM: 2.5
2409 Female, age 72, unknown 3.6
2590 Female, age 75, unknown 3.0
2665 Male, age 74, both hemispheres 2.7
2241 Male, age 72, unknown 2.6
1889 Female, age 72, unknown 2.5
2699 Male, age 18, unknown 2.4
1941 Male, age 53, unknown 2.2
1851 Male, age 51, unknown 2.1
2583 Male, age 75, right hemisphere 2.0
1916 Female, age 42, unknown 1.9
Superior colliculus
nTPM: 2.7
2087 Female, age 72, unknown 3.5
1913 Female, age 42, unknown 3.2
1995 Male, age 72, unknown 3.0
2664 Male, age 75, both hemispheres 2.7
2668 Female, age 75, unknown 2.7
1796 Male, age 53, unknown 2.6
1839 Male, age 51, unknown 2.6
2261 Male, age 18, unknown 2.6
1895 Male, age 76, right hemisphere 2.5
2587 Male, age 74, left hemisphere 2.2
Ventral tegmental area
nTPM: 2.3
2218 Male, age 76, both hemispheres 2.8
2410 Female, age 72, unknown 2.6
2223 Female, age 72, unknown 2.2
1942 Male, age 51, unknown 2.1
2021 Male, age 53, unknown 2.1
1915 Female, age 42, unknown 1.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 2.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.9
Samples: 139

Max nTPM: 7.1
Min nTPM: 0.1
Std nTPM: 1.3
Median nTPM: 2.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 7.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 7.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 6.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 6.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 6.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 5.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 5.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 5.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 5.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 5.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 5.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 3.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 3.5
FF:10158-103A5 76 years, female 3.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.9
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.5
Sample A Male 1.8
Sample B Male 2.1
Sample C Female 2.0
Sample D Female 1.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70528312 Antisense, RP_050623_02_C09, Mouse strain C57BL/6J (56 days, male) 0.2

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