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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.0 nTPM
HPA:25.0 nTPM
GTEx:23.7 nTPM
FANTOM5:52.1 Scaled Tags Per Million
Pig:47.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.7
2411 Female, age 72, unknown 23.5
1827 Male, age 72, unknown 21.3
1870 Female, age 42, unknown 21.1
1833 Male, age 53, unknown 19.8
2219 Male, age 76, both hemispheres 19.8
1830 Male, age 51, unknown 19.3
2666 Male, age 74, left hemisphere 17.2
2019 Male, age 18, unknown 16.7
2828 Female, age 72, unknown 16.3
2586 Male, age 75, left hemisphere 12.5
Dorsal raphe nucleus
nTPM: 16.2
2750 Male, age 76, both hemispheres 22.8
1828 Male, age 53, unknown 16.1
2047 Male, age 72, unknown 15.1
2298 Female, age 72, unknown 14.8
2016 Female, age 72, unknown 11.9
Inferior colliculus
nTPM: 15.7
2097 Female, age 72, unknown 16.0
1848 Female, age 42, unknown 15.9
1890 Male, age 53, unknown 15.4
2849 Male, age 72, unknown 15.3
Median raphe nucleus
nTPM: 19.9
2220 Male, age 76, midline 19.9
Pedunculopontine tegmental nucleus
nTPM: 19.1
2334 Male, age 80, both hemispheres 21.1
2338 Male, age 61, both hemispheres 18.5
1921 Female, age 85, both hemispheres 17.8
Periaquaductal grey, anterior
nTPM: 18.1
1947 Male, age 18, unknown 23.0
2502 Female, age 75, unknown 16.6
1795 Male, age 51, unknown 14.7
Periaquaductal grey, dorsal
nTPM: 13.3
2464 Female, age 72, unknown 13.9
1831 Male, age 72, unknown 13.6
1840 Male, age 53, unknown 13.0
2850 Male, age 76, both hemispheres 12.7
Periaquaductal grey, lateral
nTPM: 13.5
2053 Male, age 18, unknown 15.2
2272 Male, age 74, both hemispheres 12.9
2140 Male, age 76, both hemispheres 12.3
Pretectal area
nTPM: 16.7
1815 Male, age 53, unknown 21.3
1816 Male, age 51, unknown 19.8
2007 Male, age 72, unknown 19.4
1817 Female, age 42, unknown 18.8
1944 Female, age 72, unknown 17.9
2316 Male, age 76, right hemisphere 15.7
2825 Male, age 18, unknown 15.7
2224 Female, age 72, unknown 13.8
2667 Female, age 75, unknown 13.8
2273 Male, age 74, both hemispheres 13.7
2407 Male, age 75, both hemispheres 13.6
Red nucleus
nTPM: 20.8
2725 Female, age 75, unknown 28.1
1821 Female, age 72, unknown 26.3
1904 Male, age 53, unknown 22.4
1865 Male, age 51, unknown 22.3
2503 Female, age 72, unknown 21.9
2823 Male, age 76, right hemisphere 21.7
2588 Male, age 74, left hemisphere 21.2
1954 Female, age 42, unknown 18.8
2227 Male, age 72, unknown 17.6
2785 Male, age 18, unknown 17.5
2769 Male, age 72, unknown 17.0
2584 Male, age 75, left hemisphere 14.3
Substantia nigra
nTPM: 25.0
1916 Female, age 42, unknown 36.1
2241 Male, age 72, unknown 30.1
2409 Female, age 72, unknown 29.4
1851 Male, age 51, unknown 29.2
2699 Male, age 18, unknown 22.7
1941 Male, age 53, unknown 22.4
1889 Female, age 72, unknown 21.1
2665 Male, age 74, both hemispheres 20.4
2583 Male, age 75, right hemisphere 19.9
2590 Female, age 75, unknown 18.9
Superior colliculus
nTPM: 17.0
1895 Male, age 76, right hemisphere 20.5
2668 Female, age 75, unknown 20.2
1796 Male, age 53, unknown 19.1
1913 Female, age 42, unknown 18.5
2261 Male, age 18, unknown 17.5
2587 Male, age 74, left hemisphere 17.5
2087 Female, age 72, unknown 17.0
1839 Male, age 51, unknown 15.9
1995 Male, age 72, unknown 14.7
2664 Male, age 75, both hemispheres 9.5
Ventral tegmental area
nTPM: 22.1
2410 Female, age 72, unknown 31.0
2218 Male, age 76, both hemispheres 26.3
1915 Female, age 42, unknown 24.3
2223 Female, age 72, unknown 20.0
1942 Male, age 51, unknown 16.8
2021 Male, age 53, unknown 14.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.7
Samples: 139

Max nTPM: 47.5
Min nTPM: 11.0
Std nTPM: 7.3
Median nTPM: 21.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 47.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 45.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 44.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 43.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 42.9
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 40.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 40.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 36.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 36.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 35.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 35.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.1
FF:10158-103A5 76 years, female 52.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.2
Pig sample Sample description nTPM
Midbrain
nTPM: 47.2
Samples: 4

Max nTPM: 59.7
Min nTPM: 37.2
Sample A Female 37.2
Sample B Female 45.2
Sample C Male 59.7
Sample D Male 46.7
Periaqueductal gray
nTPM: 37.7
Samples: 3

Max nTPM: 40.9
Min nTPM: 32.4
Sample B Female 39.9
Sample C Male 40.9
Sample D Male 32.4
Substantia nigra
nTPM: 45.3
Samples: 4

Max nTPM: 56.9
Min nTPM: 33.6
Sample A Female 54.1
Sample B Female 33.6
Sample C Male 56.9
Sample D Male 36.7
Superior colliculi
nTPM: 43.8
Samples: 4

Max nTPM: 50.7
Min nTPM: 27.9
Sample A Female 48.1
Sample B Female 27.9
Sample C Male 50.7
Sample D Male 48.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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