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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:49.8 nTPM
HPA:49.8 nTPM
GTEx:38.0 nTPM
FANTOM5:148.2 Scaled Tags Per Million
Pig:122.9 nTPM
Mouse:160.8 nTPM
Allen mouse:1.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042791
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 49.8
Sample id Sample description nTPM
Hippocampus
nTPM: 38.9
1898 Male, age 80, left hemisphere 49.3
2148 Female, age 91, left hemisphere 41.7
1855 Male, age 76, left hemisphere 40.8
2529 Female, age 94, left hemisphere 36.2
1911 Female, age 85, right hemisphere 33.2
2621 Female, age 67, right hemisphere 32.4
Dentate gyrus
nTPM: 40.4
1927 Female, age 91, both hemispheres 51.7
2528 Male, age 74, both hemispheres 46.2
2246 Female, age 85, both hemispheres 40.1
2010 Male, age 76, both hemispheres 38.5
2531 Female, age 67, both hemispheres 33.1
2530 Female, age 94, left hemisphere 32.6
Entorhinal gyrus
nTPM: 38.1
1938 Female, age 85, left hemisphere 53.2
2764 Male, age 80, right hemisphere 40.3
1787 Male, age 76, left hemisphere 40.0
2613 Female, age 94, left hemisphere 34.7
2117 Female, age 91, right hemisphere 32.4
2686 Male, age 75, right hemisphere 28.0
Hippocampus, CA1
nTPM: 43.6
2045 Male, age 76, both hemispheres 51.3
1873 Female, age 85, both hemispheres 45.2
2527 Male, age 74, both hemispheres 44.4
2749 Male, age 80, left hemisphere 43.7
2082 Female, age 91, right hemisphere 33.4
Hippocampus, CA2
nTPM: 37.8
1892 Male, age 76, both hemispheres 47.3
1963 Male, age 80, left hemisphere 43.1
2113 Female, age 91, right hemisphere 36.2
1940 Female, age 85, left hemisphere 35.7
2249 Male, age 74, both hemispheres 35.4
2437 Female, age 94, left hemisphere 28.8
Hippocampus, CA3
nTPM: 37.9
2137 Male, age 80, left hemisphere 43.2
2620 Female, age 94, left hemisphere 41.0
1867 Male, age 76, both hemispheres 38.2
1891 Female, age 85, both hemispheres 37.3
2436 Male, age 74, both hemispheres 34.7
2861 Female, age 67, both hemispheres 33.0
Parahippocampal cortex
nTPM: 38.6
1850 Male, age 80, both hemispheres 56.9
1990 Female, age 91, right hemisphere 45.2
1933 Female, age 85, both hemispheres 41.7
2692 Male, age 74, both hemispheres 37.5
2018 Male, age 76, both hemispheres 37.1
2250 Female, age 67, right hemisphere 35.5
2245 Female, age 91, both hemispheres 35.4
2693 Female, age 94, both hemispheres 34.1
2532 Female, age 72, left hemisphere 33.7
2622 Female, age 67, right hemisphere 29.1
Perirhinal gyrus
nTPM: 49.8
1847 Female, age 91, left hemisphere 61.6
1794 Male, age 80, right hemisphere 53.7
1841 Female, age 85, right hemisphere 47.2
2848 Male, age 76, right hemisphere 44.6
2521 Female, age 94, right hemisphere 41.9
Subiculum
nTPM: 35.9
2729 Female, age 91, right hemisphere 40.4
1977 Female, age 85, both hemispheres 39.0
2619 Male, age 74, both hemispheres 39.0
1901 Male, age 80, both hemispheres 35.5
2438 Female, age 94, left hemisphere 32.8
2042 Male, age 76, both hemispheres 28.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.0
Samples: 197

Max nTPM: 81.7
Min nTPM: 10.5
Std nTPM: 16.0
Median nTPM: 35.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 81.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 80.7
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 80.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 77.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 75.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 75.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 74.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 73.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 69.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 69.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 69.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 148.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 148.2
FF:10169-103B7 60 years, female 179.9
FF:10153-102I9 76 years, female 116.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 122.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 86.4
Samples: 4

Max nTPM: 100.1
Min nTPM: 70.2
Sample A Female 96.2
Sample B Female 100.1
Sample C Male 70.2
Sample D Male 79.1
Entorhinal cortex
nTPM: 122.9
Samples: 4

Max nTPM: 135.6
Min nTPM: 102.0
Sample A Female 127.4
Sample B Female 126.5
Sample C Male 135.6
Sample D Male 102.0
Subiculum
nTPM: 122.9
Samples: 4

Max nTPM: 168.7
Min nTPM: 93.1
Sample A Female 168.7
Sample B Female 114.6
Sample C Male 93.1
Sample D Male 115.0
Ventral hippocampus
nTPM: 76.5
Samples: 4

Max nTPM: 95.0
Min nTPM: 66.2
Sample A Female 74.8
Sample B Female 69.8
Sample C Male 66.2
Sample D Male 95.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 160.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 160.8
Samples: 4

Max nTPM: 169.1
Min nTPM: 154.7
Sample A Male 154.7
Sample B Male 169.1
Sample C Female 157.4
Sample D Female 161.9
Hippocampal formation
nTPM: 139.2
Samples: 4

Max nTPM: 162.6
Min nTPM: 123.0
Sample A Male 162.6
Sample B Male 139.2
Sample C Female 123.0
Sample D Female 132.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.7
805 Antisense, RP_Baylor_102966, Mouse strain C57BL/6J (56 days, male) 3.4
806 Antisense, RP_Baylor_102966, Mouse strain C57BL/6J (56 days, male) 2.7
807 Sense, RPS_Baylor_37024, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.