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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.7 nTPM
HPA:72.7 nTPM
GTEx:64.1 nTPM
FANTOM5:11.8 Scaled Tags Per Million
Pig:104.0 nTPM
Mouse:13.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.0
2586 Male, age 75, left hemisphere 87.4
2828 Female, age 72, unknown 77.3
1827 Male, age 72, unknown 65.7
2666 Male, age 74, left hemisphere 62.2
1870 Female, age 42, unknown 57.1
2019 Male, age 18, unknown 56.1
1833 Male, age 53, unknown 56.0
2411 Female, age 72, unknown 55.9
1830 Male, age 51, unknown 52.2
2219 Male, age 76, both hemispheres 49.9
Dorsal raphe nucleus
nTPM: 56.6
2016 Female, age 72, unknown 60.8
1828 Male, age 53, unknown 59.0
2750 Male, age 76, both hemispheres 55.1
2298 Female, age 72, unknown 54.2
2047 Male, age 72, unknown 53.9
Inferior colliculus
nTPM: 60.8
1848 Female, age 42, unknown 62.7
2097 Female, age 72, unknown 61.5
1890 Male, age 53, unknown 59.5
2849 Male, age 72, unknown 59.5
Median raphe nucleus
nTPM: 41.5
2220 Male, age 76, midline 41.5
Pedunculopontine tegmental nucleus
nTPM: 43.0
1921 Female, age 85, both hemispheres 48.6
2334 Male, age 80, both hemispheres 46.6
2338 Male, age 61, both hemispheres 33.9
Periaquaductal grey, anterior
nTPM: 72.7
1795 Male, age 51, unknown 80.3
2502 Female, age 75, unknown 77.8
1947 Male, age 18, unknown 60.0
Periaquaductal grey, dorsal
nTPM: 60.4
2464 Female, age 72, unknown 64.7
1840 Male, age 53, unknown 63.3
2850 Male, age 76, both hemispheres 57.6
1831 Male, age 72, unknown 55.9
Periaquaductal grey, lateral
nTPM: 62.6
2140 Male, age 76, both hemispheres 72.0
2053 Male, age 18, unknown 62.2
2272 Male, age 74, both hemispheres 53.6
Pretectal area
nTPM: 66.8
1816 Male, age 51, unknown 79.2
1944 Female, age 72, unknown 74.5
2316 Male, age 76, right hemisphere 73.7
2007 Male, age 72, unknown 70.1
2667 Female, age 75, unknown 68.2
1815 Male, age 53, unknown 67.9
1817 Female, age 42, unknown 67.5
2825 Male, age 18, unknown 61.0
2407 Male, age 75, both hemispheres 58.3
2273 Male, age 74, both hemispheres 57.2
2224 Female, age 72, unknown 57.0
Red nucleus
nTPM: 59.6
2503 Female, age 72, unknown 66.3
2227 Male, age 72, unknown 65.3
2823 Male, age 76, right hemisphere 64.7
2769 Male, age 72, unknown 64.0
2785 Male, age 18, unknown 62.6
1904 Male, age 53, unknown 60.8
2588 Male, age 74, left hemisphere 60.3
1954 Female, age 42, unknown 59.2
2725 Female, age 75, unknown 56.8
2584 Male, age 75, left hemisphere 53.9
1865 Male, age 51, unknown 50.9
1821 Female, age 72, unknown 50.1
Substantia nigra
nTPM: 55.5
1916 Female, age 42, unknown 66.3
2699 Male, age 18, unknown 61.6
1889 Female, age 72, unknown 60.0
2583 Male, age 75, right hemisphere 59.5
2665 Male, age 74, both hemispheres 55.8
1851 Male, age 51, unknown 55.1
2590 Female, age 75, unknown 53.4
2241 Male, age 72, unknown 49.0
2409 Female, age 72, unknown 47.8
1941 Male, age 53, unknown 46.7
Superior colliculus
nTPM: 65.6
2261 Male, age 18, unknown 78.5
2664 Male, age 75, both hemispheres 77.9
1796 Male, age 53, unknown 74.6
2087 Female, age 72, unknown 69.7
2668 Female, age 75, unknown 63.2
1839 Male, age 51, unknown 62.7
1995 Male, age 72, unknown 62.7
1895 Male, age 76, right hemisphere 58.3
1913 Female, age 42, unknown 55.2
2587 Male, age 74, left hemisphere 53.0
Ventral tegmental area
nTPM: 56.7
1942 Male, age 51, unknown 60.3
2410 Female, age 72, unknown 59.9
2218 Male, age 76, both hemispheres 57.9
2021 Male, age 53, unknown 56.5
1915 Female, age 42, unknown 56.1
2223 Female, age 72, unknown 49.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.1
Samples: 139

Max nTPM: 154.6
Min nTPM: 35.5
Std nTPM: 17.5
Median nTPM: 61.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 154.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 128.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 127.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 105.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 99.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 97.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 93.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 92.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 91.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 91.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 90.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.8
FF:10158-103A5 76 years, female 11.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 104.0
Pig sample Sample description nTPM
Midbrain
nTPM: 95.0
Samples: 4

Max nTPM: 111.0
Min nTPM: 84.8
Sample A Female 84.8
Sample B Female 86.0
Sample C Male 111.0
Sample D Male 98.2
Periaqueductal gray
nTPM: 81.8
Samples: 3

Max nTPM: 85.1
Min nTPM: 78.8
Sample B Female 85.1
Sample C Male 81.6
Sample D Male 78.8
Substantia nigra
nTPM: 85.5
Samples: 4

Max nTPM: 97.2
Min nTPM: 80.3
Sample A Female 97.2
Sample B Female 81.5
Sample C Male 83.0
Sample D Male 80.3
Superior colliculi
nTPM: 104.0
Samples: 4

Max nTPM: 113.4
Min nTPM: 92.5
Sample A Female 113.4
Sample B Female 92.5
Sample C Male 105.4
Sample D Male 104.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.8
Samples: 4

Max nTPM: 16.2
Min nTPM: 12.1
Sample A Male 16.2
Sample B Male 13.4
Sample C Female 12.1
Sample D Female 13.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
72004448 Antisense, RP_050915_02_H02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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