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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.5 nTPM
HPA:27.5 nTPM
GTEx:78.2 nTPM
FANTOM5:47.8 Scaled Tags Per Million
Pig:59.8 nTPM
Mouse:0.7 nTPM
Allen mouse:2.5 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 27.5
Sample id Sample description nTPM
Hippocampus
nTPM: 25.6
1898 Male, age 80, left hemisphere 31.5
2529 Female, age 94, left hemisphere 27.3
1855 Male, age 76, left hemisphere 23.9
2621 Female, age 67, right hemisphere 23.9
2148 Female, age 91, left hemisphere 23.7
1911 Female, age 85, right hemisphere 23.3
Dentate gyrus
nTPM: 26.0
2530 Female, age 94, left hemisphere 29.7
2010 Male, age 76, both hemispheres 27.3
2528 Male, age 74, both hemispheres 25.9
2531 Female, age 67, both hemispheres 25.6
1927 Female, age 91, both hemispheres 25.3
2246 Female, age 85, both hemispheres 22.2
Entorhinal gyrus
nTPM: 24.9
2764 Male, age 80, right hemisphere 32.8
2117 Female, age 91, right hemisphere 26.4
1938 Female, age 85, left hemisphere 25.2
1787 Male, age 76, left hemisphere 24.5
2613 Female, age 94, left hemisphere 24.3
2686 Male, age 75, right hemisphere 16.0
Hippocampus, CA1
nTPM: 27.5
2749 Male, age 80, left hemisphere 39.7
2527 Male, age 74, both hemispheres 29.0
2082 Female, age 91, right hemisphere 24.5
1873 Female, age 85, both hemispheres 22.5
2045 Male, age 76, both hemispheres 21.6
Hippocampus, CA2
nTPM: 25.7
2249 Male, age 74, both hemispheres 31.8
1963 Male, age 80, left hemisphere 30.4
2113 Female, age 91, right hemisphere 24.9
2437 Female, age 94, left hemisphere 23.9
1892 Male, age 76, both hemispheres 22.3
1940 Female, age 85, left hemisphere 21.1
Hippocampus, CA3
nTPM: 25.2
2436 Male, age 74, both hemispheres 36.2
2137 Male, age 80, left hemisphere 28.7
2620 Female, age 94, left hemisphere 23.6
2861 Female, age 67, both hemispheres 23.4
1867 Male, age 76, both hemispheres 21.9
1891 Female, age 85, both hemispheres 17.4
Parahippocampal cortex
nTPM: 22.5
2245 Female, age 91, both hemispheres 30.3
2250 Female, age 67, right hemisphere 26.9
1990 Female, age 91, right hemisphere 25.6
2532 Female, age 72, left hemisphere 25.5
1933 Female, age 85, both hemispheres 25.2
2018 Male, age 76, both hemispheres 20.7
1850 Male, age 80, both hemispheres 20.3
2622 Female, age 67, right hemisphere 17.8
2692 Male, age 74, both hemispheres 17.0
2693 Female, age 94, both hemispheres 15.6
Perirhinal gyrus
nTPM: 24.5
1794 Male, age 80, right hemisphere 30.4
1847 Female, age 91, left hemisphere 29.8
1841 Female, age 85, right hemisphere 22.4
2521 Female, age 94, right hemisphere 22.4
2848 Male, age 76, right hemisphere 17.7
Subiculum
nTPM: 21.7
1977 Female, age 85, both hemispheres 26.1
1901 Male, age 80, both hemispheres 24.1
2619 Male, age 74, both hemispheres 23.3
2729 Female, age 91, right hemisphere 22.6
2042 Male, age 76, both hemispheres 17.2
2438 Female, age 94, left hemisphere 16.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 78.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 78.2
Samples: 197

Max nTPM: 177.9
Min nTPM: 14.6
Std nTPM: 26.6
Median nTPM: 75.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 177.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 172.8
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 157.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 154.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 150.2
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 148.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 145.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 143.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 129.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 125.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 121.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.8
FF:10169-103B7 60 years, female 50.2
FF:10153-102I9 76 years, female 45.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 59.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 55.7
Samples: 4

Max nTPM: 73.8
Min nTPM: 47.1
Sample A Female 73.8
Sample B Female 52.6
Sample C Male 49.4
Sample D Male 47.1
Entorhinal cortex
nTPM: 41.4
Samples: 4

Max nTPM: 45.1
Min nTPM: 37.9
Sample A Female 45.1
Sample B Female 41.5
Sample C Male 40.9
Sample D Male 37.9
Subiculum
nTPM: 44.5
Samples: 4

Max nTPM: 60.5
Min nTPM: 33.7
Sample A Female 60.5
Sample B Female 38.1
Sample C Male 45.7
Sample D Male 33.7
Ventral hippocampus
nTPM: 59.8
Samples: 4

Max nTPM: 73.2
Min nTPM: 38.3
Sample A Female 65.7
Sample B Female 38.3
Sample C Male 73.2
Sample D Male 62.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 0.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.7
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.4
Sample A Male 1.3
Sample B Male 0.6
Sample C Female 0.6
Sample D Female 0.4
Hippocampal formation
nTPM: 0.7
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.5
Sample A Male 0.5
Sample B Male 1.1
Sample C Female 0.5
Sample D Female 0.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.5
2549 Antisense, RP_040507_01_F01, Mouse strain C57BL/6J (56 days, male) 2.5
2550 Antisense, RP_040507_01_F01, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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