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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.5 nTPM
HPA:24.5 nTPM
GTEx:75.8 nTPM
FANTOM5:59.2 Scaled Tags Per Million
Pig:49.5 nTPM
Mouse:1.5 nTPM
Allen mouse:2.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 24.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.1
2288 Male, age 75, left hemisphere 27.9
2481 Female, age 94, left hemisphere 25.7
2290 Female, age 72, unknown 24.9
1781 Male, age 74, unknown 24.4
2289 Male, age 61, right hemisphere 22.3
2846 Female, age 79, unknown 21.1
1857 Female, age 85, left hemisphere 20.4
1854 Male, age 80, left hemisphere 18.0
Claustrum
nTPM: 23.5
2284 Female, age 91, both hemispheres 28.9
2198 Male, age 80, both hemispheres 28.2
2491 Male, age 75, both hemispheres 27.7
2292 Female, age 85, both hemispheres 22.8
2645 Female, age 72, unknown 22.0
1956 Male, age 74, unknown 21.9
2196 Female, age 79, unknown 21.6
2568 Male, age 61, both hemispheres 21.6
2392 Female, age 94, both hemispheres 16.7
Globus pallidus, externus
nTPM: 22.6
2772 Female, age 79, unknown 28.0
1996 Male, age 80, right hemisphere 27.6
2646 Male, age 61, right hemisphere 21.3
2395 Male, age 75, both hemispheres 20.9
2567 Female, age 72, unknown 15.0
Globus pallidus, internus
nTPM: 23.8
2287 Male, age 75, right hemisphere 32.7
2483 Female, age 94, right hemisphere 29.0
2778 Female, age 91, both hemispheres 24.2
2111 Female, age 85, right hemisphere 20.9
1818 Male, age 74, unknown 20.8
2037 Male, age 80, right hemisphere 20.3
2566 Female, age 72, unknown 19.1
Nucleus accumbens
nTPM: 23.8
1806 Female, age 85, left hemisphere 27.4
2286 Male, age 75, left hemisphere 27.2
1783 Male, age 74, unknown 24.8
1856 Female, age 91, right hemisphere 24.3
2732 Male, age 80, right hemisphere 24.1
2698 Female, age 72, unknown 23.2
2824 Male, age 61, right hemisphere 20.6
2391 Female, age 94, left hemisphere 18.6
Nucleus basalis of Meynert
nTPM: 19.5
2484 Female, age 94, left hemisphere 21.5
2821 Male, age 75, both hemispheres 20.1
2569 Male, age 61, both hemispheres 19.5
2393 Male, age 80, right hemisphere 16.8
Nucleus of the diagonal band
nTPM: 24.5
1812 Female, age 91, both hemispheres 26.6
1979 Male, age 74, unknown 25.8
2775 Male, age 80, right hemisphere 25.2
2195 Female, age 85, both hemispheres 24.1
2029 Male, age 61, right hemisphere 20.9
Olfactory tubercle
nTPM: 22.3
1998 Female, age 91, both hemispheres 26.7
2487 Female, age 94, left hemisphere 21.9
1846 Male, age 80, right hemisphere 20.6
2856 Male, age 75, right hemisphere 19.9
Putamen
nTPM: 21.5
2482 Female, age 94, left hemisphere 24.8
1937 Female, age 91, right hemisphere 24.6
2466 Female, age 79, unknown 21.5
2647 Male, age 75, left hemisphere 21.4
2489 Female, age 72, unknown 20.2
1838 Male, age 80, right hemisphere 19.5
1829 Male, age 74, unknown 18.2
Septal nuclei
nTPM: 23.6
1960 Male, age 74, unknown 32.1
2031 Female, age 72, unknown 27.3
2059 Female, age 85, both hemispheres 26.3
2009 Female, age 91, both hemispheres 24.2
2629 Female, age 94, right hemisphere 20.4
2199 Male, age 80, right hemisphere 17.7
2394 Male, age 61, left hemisphere 17.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 75.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 67.3
Samples: 246

Max nTPM: 149.9
Min nTPM: 19.1
Std nTPM: 22.3
Median nTPM: 63.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 149.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 149.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 145.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 131.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 128.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 128.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 128.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 124.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 123.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 123.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 120.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 73.2
Samples: 246

Max nTPM: 169.9
Min nTPM: 24.4
Std nTPM: 23.9
Median nTPM: 71.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 169.9
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 164.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 158.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 146.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 128.6
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 125.4
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 124.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 117.2
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 117.1
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 117.0
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 115.9
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Brain - Putamen (basal ganglia)
Average nTPM: 75.8
Samples: 205

Max nTPM: 165.2
Min nTPM: 26.6
Std nTPM: 20.5
Median nTPM: 75.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 165.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 145.2
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 128.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 125.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 122.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 121.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 114.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 114.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 113.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 108.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 106.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.1
FF:10164-103B2 76 years, female 55.1
Globus pallidus
Scaled Tags Per Million: 44.6
FF:10175-103C4 60 years, female 56.0
FF:10161-103A8 76 years, female 33.2
Nucleus accumbens
Scaled Tags Per Million: 45.3
FF:10037-101F1 23-56 years, mixed 45.3
Putamen
Scaled Tags Per Million: 59.2
FF:10176-103C5 60 years, female 59.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 49.5
Pig sample Sample description nTPM
Caudate
nTPM: 49.5
Samples: 4

Max nTPM: 56.3
Min nTPM: 42.9
Sample A Female 44.0
Sample B Female 54.6
Sample C Male 56.3
Sample D Male 42.9
Putamen
nTPM: 45.7
Samples: 4

Max nTPM: 56.7
Min nTPM: 36.4
Sample A Female 39.8
Sample B Female 36.4
Sample C Male 56.7
Sample D Male 50.0
Septum
nTPM: 46.8
Samples: 4

Max nTPM: 49.5
Min nTPM: 43.7
Sample A Female 49.5
Sample B Female 43.7
Sample C Male 46.9
Sample D Male 47.1
Ventral pallidum
nTPM: 42.8
Samples: 4

Max nTPM: 45.5
Min nTPM: 38.2
Sample A Female 45.5
Sample B Female 43.8
Sample C Male 43.6
Sample D Male 38.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.7
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.1
Sample A Male 0.2
Sample B Male 2.3
Sample C Female 0.2
Sample D Female 0.1
Septum
nTPM: 1.5
Samples: 4

Max nTPM: 2.7
Min nTPM: 0.8
Sample A Male 1.3
Sample B Male 1.2
Sample C Female 2.7
Sample D Female 0.8
Ventral forebrain
nTPM: 0.9
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.3
Sample A Male 1.1
Sample B Male 0.7
Sample C Female 1.3
Sample D Female 0.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.8
2549 Antisense, RP_040507_01_F01, Mouse strain C57BL/6J (56 days, male) 1.8
2550 Antisense, RP_040507_01_F01, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 2.1
2549 Antisense, RP_040507_01_F01, Mouse strain C57BL/6J (56 days, male) 2.1
2550 Antisense, RP_040507_01_F01, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.