ABOUTMENU
HELP
NEWS
SCAND1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.6 nTPM
HPA:29.6 nTPM
GTEx:77.2 nTPM
FANTOM5:40.8 Scaled Tags Per Million
Pig:59.9 nTPM
Mouse:0.1 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.8
2586 Male, age 75, left hemisphere 27.0
2828 Female, age 72, unknown 26.9
1827 Male, age 72, unknown 25.3
2411 Female, age 72, unknown 24.7
1870 Female, age 42, unknown 22.9
2019 Male, age 18, unknown 22.2
2219 Male, age 76, both hemispheres 20.8
1830 Male, age 51, unknown 20.2
1833 Male, age 53, unknown 20.1
2666 Male, age 74, left hemisphere 17.5
Dorsal raphe nucleus
nTPM: 26.8
2298 Female, age 72, unknown 34.4
2047 Male, age 72, unknown 28.3
1828 Male, age 53, unknown 24.9
2750 Male, age 76, both hemispheres 24.2
2016 Female, age 72, unknown 22.1
Inferior colliculus
nTPM: 23.2
2097 Female, age 72, unknown 27.5
1848 Female, age 42, unknown 23.3
1890 Male, age 53, unknown 22.4
2849 Male, age 72, unknown 19.6
Median raphe nucleus
nTPM: 29.6
2220 Male, age 76, midline 29.6
Pedunculopontine tegmental nucleus
nTPM: 22.7
2334 Male, age 80, both hemispheres 25.1
1921 Female, age 85, both hemispheres 23.9
2338 Male, age 61, both hemispheres 19.1
Periaquaductal grey, anterior
nTPM: 29.2
1795 Male, age 51, unknown 31.8
2502 Female, age 75, unknown 28.9
1947 Male, age 18, unknown 27.0
Periaquaductal grey, dorsal
nTPM: 20.6
2850 Male, age 76, both hemispheres 21.5
1840 Male, age 53, unknown 21.4
1831 Male, age 72, unknown 20.6
2464 Female, age 72, unknown 19.0
Periaquaductal grey, lateral
nTPM: 26.2
2272 Male, age 74, both hemispheres 34.2
2140 Male, age 76, both hemispheres 25.4
2053 Male, age 18, unknown 19.1
Pretectal area
nTPM: 24.5
2273 Male, age 74, both hemispheres 32.5
2007 Male, age 72, unknown 29.5
2224 Female, age 72, unknown 27.2
1816 Male, age 51, unknown 25.6
1944 Female, age 72, unknown 25.4
1817 Female, age 42, unknown 24.5
2667 Female, age 75, unknown 22.2
2825 Male, age 18, unknown 21.5
2316 Male, age 76, right hemisphere 21.2
1815 Male, age 53, unknown 20.9
2407 Male, age 75, both hemispheres 19.2
Red nucleus
nTPM: 22.1
2785 Male, age 18, unknown 28.3
2503 Female, age 72, unknown 25.6
2227 Male, age 72, unknown 24.2
2769 Male, age 72, unknown 23.9
2725 Female, age 75, unknown 22.2
1904 Male, age 53, unknown 21.5
1954 Female, age 42, unknown 21.5
1821 Female, age 72, unknown 21.3
2823 Male, age 76, right hemisphere 19.6
1865 Male, age 51, unknown 19.0
2588 Male, age 74, left hemisphere 19.0
2584 Male, age 75, left hemisphere 18.8
Substantia nigra
nTPM: 23.5
1916 Female, age 42, unknown 35.1
1851 Male, age 51, unknown 28.5
1941 Male, age 53, unknown 27.6
2590 Female, age 75, unknown 25.5
1889 Female, age 72, unknown 25.0
2699 Male, age 18, unknown 24.0
2583 Male, age 75, right hemisphere 20.7
2665 Male, age 74, both hemispheres 19.5
2241 Male, age 72, unknown 16.1
2409 Female, age 72, unknown 12.9
Superior colliculus
nTPM: 22.2
1796 Male, age 53, unknown 29.2
2261 Male, age 18, unknown 26.9
2087 Female, age 72, unknown 24.4
2587 Male, age 74, left hemisphere 21.6
2668 Female, age 75, unknown 21.5
2664 Male, age 75, both hemispheres 20.9
1913 Female, age 42, unknown 20.5
1995 Male, age 72, unknown 20.5
1839 Male, age 51, unknown 19.9
1895 Male, age 76, right hemisphere 17.1
Ventral tegmental area
nTPM: 26.8
1915 Female, age 42, unknown 30.3
2410 Female, age 72, unknown 29.3
2218 Male, age 76, both hemispheres 28.3
1942 Male, age 51, unknown 26.1
2223 Female, age 72, unknown 23.4
2021 Male, age 53, unknown 23.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 77.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.2
Samples: 139

Max nTPM: 191.2
Min nTPM: 29.7
Std nTPM: 24.5
Median nTPM: 76.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 191.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 175.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 131.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 125.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 117.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 116.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 115.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 113.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 112.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 110.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 109.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.8
FF:10158-103A5 76 years, female 40.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 59.9
Pig sample Sample description nTPM
Midbrain
nTPM: 48.6
Samples: 4

Max nTPM: 56.0
Min nTPM: 42.6
Sample A Female 45.4
Sample B Female 42.6
Sample C Male 50.5
Sample D Male 56.0
Periaqueductal gray
nTPM: 40.4
Samples: 3

Max nTPM: 47.3
Min nTPM: 36.4
Sample B Female 36.4
Sample C Male 47.3
Sample D Male 37.5
Substantia nigra
nTPM: 45.1
Samples: 4

Max nTPM: 64.0
Min nTPM: 28.0
Sample A Female 64.0
Sample B Female 37.9
Sample C Male 50.4
Sample D Male 28.0
Superior colliculi
nTPM: 59.9
Samples: 4

Max nTPM: 80.4
Min nTPM: 50.8
Sample A Female 80.4
Sample B Female 53.3
Sample C Male 55.1
Sample D Male 50.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Male 0.3
Sample B Male 0.2
Sample C Female 0.1
Sample D Female 0.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
2549 Antisense, RP_040507_01_F01, Mouse strain C57BL/6J (56 days, male) 1.6
2550 Antisense, RP_040507_01_F01, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.