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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:112.3 nTPM
HPA:112.3 nTPM
GTEx:131.4 nTPM
FANTOM5:50.5 Scaled Tags Per Million
Pig:81.5 nTPM
Mouse:252.0 nTPM
Allen mouse:17.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036575Antibody HPA036576
Glial cells HighHigh
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 112.3
Sample id Sample description nTPM
Hippocampus
nTPM: 58.6
2621 Female, age 67, right hemisphere 78.8
2529 Female, age 94, left hemisphere 71.1
1911 Female, age 85, right hemisphere 61.7
2148 Female, age 91, left hemisphere 49.7
1898 Male, age 80, left hemisphere 46.6
1855 Male, age 76, left hemisphere 43.9
Dentate gyrus
nTPM: 58.4
2530 Female, age 94, left hemisphere 80.8
2531 Female, age 67, both hemispheres 63.5
2246 Female, age 85, both hemispheres 55.8
2528 Male, age 74, both hemispheres 53.5
2010 Male, age 76, both hemispheres 51.8
1927 Female, age 91, both hemispheres 44.9
Entorhinal gyrus
nTPM: 112.3
2613 Female, age 94, left hemisphere 161.6
2764 Male, age 80, right hemisphere 129.7
2117 Female, age 91, right hemisphere 111.4
2686 Male, age 75, right hemisphere 93.5
1938 Female, age 85, left hemisphere 90.4
1787 Male, age 76, left hemisphere 87.4
Hippocampus, CA1
nTPM: 50.9
2082 Female, age 91, right hemisphere 67.1
2527 Male, age 74, both hemispheres 67.1
2749 Male, age 80, left hemisphere 56.1
1873 Female, age 85, both hemispheres 48.5
2045 Male, age 76, both hemispheres 15.5
Hippocampus, CA2
nTPM: 66.5
2437 Female, age 94, left hemisphere 78.0
2113 Female, age 91, right hemisphere 70.2
1963 Male, age 80, left hemisphere 66.9
2249 Male, age 74, both hemispheres 63.5
1892 Male, age 76, both hemispheres 61.0
1940 Female, age 85, left hemisphere 59.5
Hippocampus, CA3
nTPM: 55.2
1891 Female, age 85, both hemispheres 74.3
2620 Female, age 94, left hemisphere 62.4
1867 Male, age 76, both hemispheres 58.0
2861 Female, age 67, both hemispheres 57.1
2137 Male, age 80, left hemisphere 46.2
2436 Male, age 74, both hemispheres 33.0
Parahippocampal cortex
nTPM: 89.8
2532 Female, age 72, left hemisphere 120.9
2692 Male, age 74, both hemispheres 118.2
2622 Female, age 67, right hemisphere 108.8
2245 Female, age 91, both hemispheres 95.7
1990 Female, age 91, right hemisphere 93.0
2693 Female, age 94, both hemispheres 86.4
1850 Male, age 80, both hemispheres 83.9
1933 Female, age 85, both hemispheres 79.8
2018 Male, age 76, both hemispheres 57.9
2250 Female, age 67, right hemisphere 53.8
Perirhinal gyrus
nTPM: 79.5
2521 Female, age 94, right hemisphere 86.2
2848 Male, age 76, right hemisphere 79.9
1794 Male, age 80, right hemisphere 79.2
1847 Female, age 91, left hemisphere 78.1
1841 Female, age 85, right hemisphere 74.2
Subiculum
nTPM: 83.9
1977 Female, age 85, both hemispheres 98.8
2042 Male, age 76, both hemispheres 96.2
2619 Male, age 74, both hemispheres 91.5
1901 Male, age 80, both hemispheres 91.3
2438 Female, age 94, left hemisphere 85.1
2729 Female, age 91, right hemisphere 40.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 131.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 131.4
Samples: 197

Max nTPM: 330.2
Min nTPM: 10.3
Std nTPM: 46.0
Median nTPM: 124.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 330.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 276.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 272.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 256.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 246.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 243.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 232.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 230.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 227.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 220.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 212.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 50.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 50.5
FF:10169-103B7 60 years, female 81.6
FF:10153-102I9 76 years, female 19.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 81.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 53.1
Samples: 4

Max nTPM: 69.4
Min nTPM: 32.9
Sample A Female 69.4
Sample B Female 50.6
Sample C Male 59.4
Sample D Male 32.9
Entorhinal cortex
nTPM: 81.5
Samples: 4

Max nTPM: 92.7
Min nTPM: 68.2
Sample A Female 79.9
Sample B Female 85.1
Sample C Male 92.7
Sample D Male 68.2
Subiculum
nTPM: 61.1
Samples: 4

Max nTPM: 83.8
Min nTPM: 49.2
Sample A Female 83.8
Sample B Female 60.4
Sample C Male 49.2
Sample D Male 51.1
Ventral hippocampus
nTPM: 49.6
Samples: 4

Max nTPM: 65.1
Min nTPM: 38.8
Sample A Female 47.0
Sample B Female 38.8
Sample C Male 65.1
Sample D Male 47.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 252.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 243.5
Samples: 4

Max nTPM: 250.9
Min nTPM: 234.3
Sample A Male 250.9
Sample B Male 250.4
Sample C Female 234.3
Sample D Female 238.2
Hippocampal formation
nTPM: 252.1
Samples: 4

Max nTPM: 288.3
Min nTPM: 228.8
Sample A Male 239.7
Sample B Male 251.5
Sample C Female 288.3
Sample D Female 228.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 17.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 17.7
74724775 Antisense, RP_060220_04_B09, Mouse strain C57BL/6J (56 days, male) 18.2
69407355 Antisense, RP_050414_01_D12, Mouse strain C57BL/6J (56 days, male) 17.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.