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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:102.3 nTPM
HPA:102.3 nTPM
GTEx:98.0 nTPM
FANTOM5:28.2 Scaled Tags Per Million
Pig:64.1 nTPM
Mouse:220.5 nTPM
Allen mouse:13.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 102.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.9
2586 Male, age 75, left hemisphere 117.2
2828 Female, age 72, unknown 100.8
2411 Female, age 72, unknown 100.2
1830 Male, age 51, unknown 97.1
1833 Male, age 53, unknown 95.0
1827 Male, age 72, unknown 93.1
2666 Male, age 74, left hemisphere 90.2
1870 Female, age 42, unknown 85.7
2019 Male, age 18, unknown 73.1
2219 Male, age 76, both hemispheres 66.0
Dorsal raphe nucleus
nTPM: 51.4
2750 Male, age 76, both hemispheres 92.7
2016 Female, age 72, unknown 47.5
1828 Male, age 53, unknown 42.0
2298 Female, age 72, unknown 39.0
2047 Male, age 72, unknown 35.9
Inferior colliculus
nTPM: 59.4
2849 Male, age 72, unknown 75.6
1848 Female, age 42, unknown 61.8
1890 Male, age 53, unknown 50.4
2097 Female, age 72, unknown 50.0
Median raphe nucleus
nTPM: 48.4
2220 Male, age 76, midline 48.4
Pedunculopontine tegmental nucleus
nTPM: 61.0
2334 Male, age 80, both hemispheres 72.0
1921 Female, age 85, both hemispheres 62.8
2338 Male, age 61, both hemispheres 48.0
Periaquaductal grey, anterior
nTPM: 99.1
1947 Male, age 18, unknown 108.9
2502 Female, age 75, unknown 105.2
1795 Male, age 51, unknown 83.4
Periaquaductal grey, dorsal
nTPM: 43.3
2464 Female, age 72, unknown 69.1
1831 Male, age 72, unknown 42.4
1840 Male, age 53, unknown 41.9
2850 Male, age 76, both hemispheres 19.8
Periaquaductal grey, lateral
nTPM: 45.3
2053 Male, age 18, unknown 62.5
2272 Male, age 74, both hemispheres 47.0
2140 Male, age 76, both hemispheres 26.5
Pretectal area
nTPM: 69.0
2407 Male, age 75, both hemispheres 104.4
1815 Male, age 53, unknown 90.4
2316 Male, age 76, right hemisphere 86.4
2007 Male, age 72, unknown 78.7
2825 Male, age 18, unknown 78.5
1817 Female, age 42, unknown 70.9
1816 Male, age 51, unknown 70.8
1944 Female, age 72, unknown 70.7
2224 Female, age 72, unknown 41.9
2667 Female, age 75, unknown 37.4
2273 Male, age 74, both hemispheres 28.6
Red nucleus
nTPM: 102.3
2584 Male, age 75, left hemisphere 125.0
2823 Male, age 76, right hemisphere 124.5
2725 Female, age 75, unknown 108.4
2588 Male, age 74, left hemisphere 107.9
1904 Male, age 53, unknown 107.1
1865 Male, age 51, unknown 105.5
2769 Male, age 72, unknown 99.7
2227 Male, age 72, unknown 98.3
2503 Female, age 72, unknown 95.5
2785 Male, age 18, unknown 94.0
1954 Female, age 42, unknown 83.0
1821 Female, age 72, unknown 78.9
Substantia nigra
nTPM: 76.6
2590 Female, age 75, unknown 113.6
2583 Male, age 75, right hemisphere 106.0
1851 Male, age 51, unknown 80.5
2409 Female, age 72, unknown 76.2
1941 Male, age 53, unknown 72.3
2665 Male, age 74, both hemispheres 71.7
1889 Female, age 72, unknown 69.3
1916 Female, age 42, unknown 66.4
2699 Male, age 18, unknown 55.7
2241 Male, age 72, unknown 54.2
Superior colliculus
nTPM: 87.7
1895 Male, age 76, right hemisphere 109.1
1995 Male, age 72, unknown 102.5
1913 Female, age 42, unknown 94.5
1796 Male, age 53, unknown 93.3
2261 Male, age 18, unknown 89.2
2664 Male, age 75, both hemispheres 84.7
1839 Male, age 51, unknown 83.5
2668 Female, age 75, unknown 79.0
2587 Male, age 74, left hemisphere 72.4
2087 Female, age 72, unknown 68.4
Ventral tegmental area
nTPM: 67.2
2410 Female, age 72, unknown 93.1
2218 Male, age 76, both hemispheres 70.1
1942 Male, age 51, unknown 65.7
1915 Female, age 42, unknown 64.7
2223 Female, age 72, unknown 55.2
2021 Male, age 53, unknown 54.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 98.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.0
Samples: 139

Max nTPM: 312.0
Min nTPM: 27.0
Std nTPM: 44.1
Median nTPM: 87.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 312.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 281.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 228.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 228.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 187.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 184.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 168.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 167.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 159.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 153.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 151.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.2
FF:10158-103A5 76 years, female 28.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.1
Pig sample Sample description nTPM
Midbrain
nTPM: 64.1
Samples: 4

Max nTPM: 73.7
Min nTPM: 57.6
Sample A Female 65.7
Sample B Female 59.4
Sample C Male 73.7
Sample D Male 57.6
Periaqueductal gray
nTPM: 53.5
Samples: 3

Max nTPM: 57.5
Min nTPM: 50.2
Sample B Female 57.5
Sample C Male 52.8
Sample D Male 50.2
Substantia nigra
nTPM: 55.3
Samples: 4

Max nTPM: 70.4
Min nTPM: 33.7
Sample A Female 70.4
Sample B Female 33.7
Sample C Male 55.0
Sample D Male 62.1
Superior colliculi
nTPM: 57.2
Samples: 4

Max nTPM: 70.4
Min nTPM: 27.7
Sample A Female 65.3
Sample B Female 27.7
Sample C Male 65.2
Sample D Male 70.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 220.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 220.6
Samples: 4

Max nTPM: 231.3
Min nTPM: 208.7
Sample A Male 208.7
Sample B Male 218.9
Sample C Female 231.3
Sample D Female 223.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.3
74724775 Antisense, RP_060220_04_B09, Mouse strain C57BL/6J (56 days, male) 14.2
69407355 Antisense, RP_050414_01_D12, Mouse strain C57BL/6J (56 days, male) 12.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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