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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.2 nTPM
HPA:21.2 nTPM
GTEx:10.7 nTPM
FANTOM5:33.6 Scaled Tags Per Million
Pig:13.7 nTPM
Mouse:24.0 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.3
1857 Female, age 85, left hemisphere 12.3
2481 Female, age 94, left hemisphere 12.2
1854 Male, age 80, left hemisphere 12.1
2288 Male, age 75, left hemisphere 12.1
2290 Female, age 72, unknown 11.3
1781 Male, age 74, unknown 11.1
2289 Male, age 61, right hemisphere 10.8
2846 Female, age 79, unknown 8.5
Claustrum
nTPM: 12.9
2491 Male, age 75, both hemispheres 14.6
2198 Male, age 80, both hemispheres 14.5
2196 Female, age 79, unknown 13.5
2645 Female, age 72, unknown 13.1
2284 Female, age 91, both hemispheres 13.0
2568 Male, age 61, both hemispheres 12.6
2392 Female, age 94, both hemispheres 11.9
1956 Male, age 74, unknown 11.8
2292 Female, age 85, both hemispheres 11.4
Globus pallidus, externus
nTPM: 21.2
2646 Male, age 61, right hemisphere 26.7
1996 Male, age 80, right hemisphere 23.8
2567 Female, age 72, unknown 18.7
2772 Female, age 79, unknown 18.7
2395 Male, age 75, both hemispheres 18.1
Globus pallidus, internus
nTPM: 19.3
2037 Male, age 80, right hemisphere 20.9
2287 Male, age 75, right hemisphere 20.6
2566 Female, age 72, unknown 20.2
2483 Female, age 94, right hemisphere 20.0
1818 Male, age 74, unknown 19.3
2778 Female, age 91, both hemispheres 17.3
2111 Female, age 85, right hemisphere 17.0
Nucleus accumbens
nTPM: 12.5
2732 Male, age 80, right hemisphere 16.5
2698 Female, age 72, unknown 14.1
2286 Male, age 75, left hemisphere 14.0
2391 Female, age 94, left hemisphere 13.9
1806 Female, age 85, left hemisphere 13.6
2824 Male, age 61, right hemisphere 9.9
1856 Female, age 91, right hemisphere 9.8
1783 Male, age 74, unknown 8.6
Nucleus basalis of Meynert
nTPM: 16.2
2569 Male, age 61, both hemispheres 26.9
2484 Female, age 94, left hemisphere 13.6
2393 Male, age 80, right hemisphere 13.1
2821 Male, age 75, both hemispheres 11.2
Nucleus of the diagonal band
nTPM: 13.7
1812 Female, age 91, both hemispheres 15.5
2775 Male, age 80, right hemisphere 14.3
2195 Female, age 85, both hemispheres 13.9
1979 Male, age 74, unknown 13.7
2029 Male, age 61, right hemisphere 11.2
Olfactory tubercle
nTPM: 11.8
1846 Male, age 80, right hemisphere 14.1
2487 Female, age 94, left hemisphere 11.7
2856 Male, age 75, right hemisphere 11.6
1998 Female, age 91, both hemispheres 9.9
Putamen
nTPM: 11.9
2647 Male, age 75, left hemisphere 17.2
1838 Male, age 80, right hemisphere 13.4
1829 Male, age 74, unknown 12.5
2482 Female, age 94, left hemisphere 11.5
2489 Female, age 72, unknown 10.5
1937 Female, age 91, right hemisphere 10.1
2466 Female, age 79, unknown 8.1
Septal nuclei
nTPM: 13.4
2059 Female, age 85, both hemispheres 17.6
2199 Male, age 80, right hemisphere 15.3
2394 Male, age 61, left hemisphere 14.8
2009 Female, age 91, both hemispheres 12.9
2629 Female, age 94, right hemisphere 12.7
2031 Female, age 72, unknown 10.4
1960 Male, age 74, unknown 10.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.7
Samples: 246

Max nTPM: 37.8
Min nTPM: 1.0
Std nTPM: 5.4
Median nTPM: 8.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 37.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 32.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 29.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 26.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 24.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 23.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 22.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 22.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 21.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 21.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 20.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.7
Samples: 246

Max nTPM: 40.7
Min nTPM: 1.9
Std nTPM: 6.0
Median nTPM: 7.9
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 40.7
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 32.7
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 32.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 31.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 29.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 27.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 25.3
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 25.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 24.9
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 24.1
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 22.1
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Brain - Putamen (basal ganglia)
Average nTPM: 10.7
Samples: 205

Max nTPM: 33.0
Min nTPM: 2.5
Std nTPM: 5.3
Median nTPM: 9.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 33.0
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 28.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 27.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 26.6
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 24.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 24.1
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 23.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 23.0
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 22.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 21.8
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 21.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.7
FF:10164-103B2 76 years, female 7.7
Globus pallidus
Scaled Tags Per Million: 33.6
FF:10161-103A8 76 years, female 37.2
FF:10175-103C4 60 years, female 29.9
Nucleus accumbens
Scaled Tags Per Million: 21.5
FF:10037-101F1 23-56 years, mixed 21.5
Putamen
Scaled Tags Per Million: 20.4
FF:10176-103C5 60 years, female 20.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 13.7
Pig sample Sample description nTPM
Caudate
nTPM: 3.7
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.0
Sample A Female 4.1
Sample B Female 3.0
Sample C Male 4.2
Sample D Male 3.5
Putamen
nTPM: 13.7
Samples: 4

Max nTPM: 22.3
Min nTPM: 4.9
Sample A Female 22.3
Sample B Female 4.9
Sample C Male 10.8
Sample D Male 16.7
Septum
nTPM: 8.3
Samples: 4

Max nTPM: 11.4
Min nTPM: 4.7
Sample A Female 7.3
Sample B Female 4.7
Sample C Male 9.9
Sample D Male 11.4
Ventral pallidum
nTPM: 12.5
Samples: 4

Max nTPM: 21.2
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 7.2
Sample C Male 21.2
Sample D Male 17.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 24.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.6
Samples: 4

Max nTPM: 27.7
Min nTPM: 19.9
Sample A Male 19.9
Sample B Male 23.8
Sample C Female 22.9
Sample D Female 27.7
Septum
nTPM: 23.9
Samples: 4

Max nTPM: 28.1
Min nTPM: 16.8
Sample A Male 16.8
Sample B Male 28.1
Sample C Female 24.9
Sample D Female 25.8
Ventral forebrain
nTPM: 24.0
Samples: 4

Max nTPM: 25.9
Min nTPM: 22.2
Sample A Male 22.2
Sample B Male 23.9
Sample C Female 25.9
Sample D Female 23.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
100144108 Antisense, RP_110421_01_D09, Mouse strain C57BL/6J (56 days, male) 0.1
67850953 Antisense, RP_041018_01_A12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
100144108 Antisense, RP_110421_01_D09, Mouse strain C57BL/6J (56 days, male) 0.1
67850953 Antisense, RP_041018_01_A12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.