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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.4 nTPM
HPA:39.4 nTPM
GTEx:31.4 nTPM
FANTOM5:67.5 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:79.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.5
1870 Female, age 42, unknown 39.3
2411 Female, age 72, unknown 39.2
1827 Male, age 72, unknown 39.0
2019 Male, age 18, unknown 38.3
1833 Male, age 53, unknown 37.3
2828 Female, age 72, unknown 37.1
2666 Male, age 74, left hemisphere 37.0
1830 Male, age 51, unknown 36.9
2219 Male, age 76, both hemispheres 35.7
2586 Male, age 75, left hemisphere 35.3
Dorsal raphe nucleus
nTPM: 38.1
2298 Female, age 72, unknown 38.8
2016 Female, age 72, unknown 38.4
2047 Male, age 72, unknown 37.9
2750 Male, age 76, both hemispheres 37.6
1828 Male, age 53, unknown 37.5
Inferior colliculus
nTPM: 38.5
2097 Female, age 72, unknown 41.0
2849 Male, age 72, unknown 38.6
1848 Female, age 42, unknown 37.8
1890 Male, age 53, unknown 36.8
Median raphe nucleus
nTPM: 39.4
2220 Male, age 76, midline 39.4
Pedunculopontine tegmental nucleus
nTPM: 38.9
1921 Female, age 85, both hemispheres 39.3
2334 Male, age 80, both hemispheres 39.1
2338 Male, age 61, both hemispheres 38.3
Periaquaductal grey, anterior
nTPM: 37.6
1947 Male, age 18, unknown 38.2
1795 Male, age 51, unknown 37.5
2502 Female, age 75, unknown 37.1
Periaquaductal grey, dorsal
nTPM: 37.9
1840 Male, age 53, unknown 39.6
2464 Female, age 72, unknown 37.6
2850 Male, age 76, both hemispheres 37.6
1831 Male, age 72, unknown 36.9
Periaquaductal grey, lateral
nTPM: 38.2
2272 Male, age 74, both hemispheres 39.1
2053 Male, age 18, unknown 38.6
2140 Male, age 76, both hemispheres 36.9
Pretectal area
nTPM: 39.1
1816 Male, age 51, unknown 42.2
2273 Male, age 74, both hemispheres 40.0
2224 Female, age 72, unknown 39.5
1944 Female, age 72, unknown 39.2
2007 Male, age 72, unknown 39.1
2667 Female, age 75, unknown 38.8
1815 Male, age 53, unknown 38.5
1817 Female, age 42, unknown 38.5
2825 Male, age 18, unknown 38.4
2316 Male, age 76, right hemisphere 38.1
2407 Male, age 75, both hemispheres 37.4
Red nucleus
nTPM: 37.8
2725 Female, age 75, unknown 40.2
1821 Female, age 72, unknown 39.6
1954 Female, age 42, unknown 38.6
2503 Female, age 72, unknown 38.6
1904 Male, age 53, unknown 37.8
2588 Male, age 74, left hemisphere 37.6
2785 Male, age 18, unknown 37.3
2227 Male, age 72, unknown 37.2
1865 Male, age 51, unknown 36.9
2823 Male, age 76, right hemisphere 36.6
2769 Male, age 72, unknown 36.5
2584 Male, age 75, left hemisphere 36.2
Substantia nigra
nTPM: 38.2
2241 Male, age 72, unknown 40.9
1889 Female, age 72, unknown 40.0
1941 Male, age 53, unknown 39.7
2409 Female, age 72, unknown 39.4
1851 Male, age 51, unknown 37.7
1916 Female, age 42, unknown 37.6
2583 Male, age 75, right hemisphere 37.5
2590 Female, age 75, unknown 36.6
2699 Male, age 18, unknown 36.6
2665 Male, age 74, both hemispheres 35.7
Superior colliculus
nTPM: 37.9
1895 Male, age 76, right hemisphere 38.9
2087 Female, age 72, unknown 38.9
2261 Male, age 18, unknown 38.6
1796 Male, age 53, unknown 38.4
2587 Male, age 74, left hemisphere 38.1
2668 Female, age 75, unknown 37.9
1839 Male, age 51, unknown 37.6
1913 Female, age 42, unknown 37.5
2664 Male, age 75, both hemispheres 36.8
1995 Male, age 72, unknown 36.6
Ventral tegmental area
nTPM: 37.5
2410 Female, age 72, unknown 38.7
1915 Female, age 42, unknown 37.9
2218 Male, age 76, both hemispheres 37.8
1942 Male, age 51, unknown 37.0
2223 Female, age 72, unknown 36.9
2021 Male, age 53, unknown 36.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.4
Samples: 139

Max nTPM: 122.1
Min nTPM: 18.3
Std nTPM: 13.7
Median nTPM: 28.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 122.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 109.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 93.6
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 83.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 50.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 48.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 44.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 44.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 42.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 41.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.5
FF:10158-103A5 76 years, female 67.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.7
Pig sample Sample description nTPM
Midbrain
nTPM: 20.2
Samples: 4

Max nTPM: 22.1
Min nTPM: 18.3
Sample A Female 20.9
Sample B Female 18.3
Sample C Male 19.4
Sample D Male 22.1
Periaqueductal gray
nTPM: 20.7
Samples: 3

Max nTPM: 23.8
Min nTPM: 17.8
Sample B Female 17.8
Sample C Male 23.8
Sample D Male 20.5
Substantia nigra
nTPM: 20.1
Samples: 4

Max nTPM: 25.7
Min nTPM: 15.2
Sample A Female 25.7
Sample B Female 15.2
Sample C Male 23.3
Sample D Male 16.2
Superior colliculi
nTPM: 20.7
Samples: 4

Max nTPM: 24.8
Min nTPM: 14.8
Sample A Female 24.8
Sample B Female 14.8
Sample C Male 21.1
Sample D Male 22.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 79.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 79.1
Samples: 4

Max nTPM: 81.5
Min nTPM: 76.1
Sample A Male 76.1
Sample B Male 81.5
Sample C Female 80.2
Sample D Female 78.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
100145375 Antisense, RP_110519_02_F09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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