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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.0 nTPM
HPA:8.0 nTPM
GTEx:10.9 nTPM
FANTOM5:8.3 Scaled Tags Per Million
Pig:16.9 nTPM
Mouse:69.8 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.4
2586 Male, age 75, left hemisphere 9.6
2019 Male, age 18, unknown 7.7
2219 Male, age 76, both hemispheres 7.6
2828 Female, age 72, unknown 7.6
1827 Male, age 72, unknown 7.5
2666 Male, age 74, left hemisphere 7.5
2411 Female, age 72, unknown 7.1
1870 Female, age 42, unknown 6.9
1833 Male, age 53, unknown 6.5
1830 Male, age 51, unknown 6.1
Dorsal raphe nucleus
nTPM: 7.6
2298 Female, age 72, unknown 8.9
1828 Male, age 53, unknown 7.9
2047 Male, age 72, unknown 7.5
2016 Female, age 72, unknown 7.2
2750 Male, age 76, both hemispheres 6.6
Inferior colliculus
nTPM: 7.6
1890 Male, age 53, unknown 7.7
2097 Female, age 72, unknown 7.6
1848 Female, age 42, unknown 7.5
2849 Male, age 72, unknown 7.4
Median raphe nucleus
nTPM: 6.6
2220 Male, age 76, midline 6.6
Pedunculopontine tegmental nucleus
nTPM: 6.9
2334 Male, age 80, both hemispheres 7.7
1921 Female, age 85, both hemispheres 7.1
2338 Male, age 61, both hemispheres 5.8
Periaquaductal grey, anterior
nTPM: 7.5
1795 Male, age 51, unknown 8.1
1947 Male, age 18, unknown 7.5
2502 Female, age 75, unknown 6.9
Periaquaductal grey, dorsal
nTPM: 7.5
2850 Male, age 76, both hemispheres 7.7
1840 Male, age 53, unknown 7.5
1831 Male, age 72, unknown 7.4
2464 Female, age 72, unknown 7.3
Periaquaductal grey, lateral
nTPM: 7.7
2272 Male, age 74, both hemispheres 9.2
2053 Male, age 18, unknown 7.4
2140 Male, age 76, both hemispheres 6.3
Pretectal area
nTPM: 8.0
1816 Male, age 51, unknown 9.4
2273 Male, age 74, both hemispheres 9.0
1944 Female, age 72, unknown 8.8
2007 Male, age 72, unknown 8.7
1817 Female, age 42, unknown 8.3
1815 Male, age 53, unknown 8.2
2224 Female, age 72, unknown 7.8
2407 Male, age 75, both hemispheres 7.6
2825 Male, age 18, unknown 7.1
2667 Female, age 75, unknown 6.6
2316 Male, age 76, right hemisphere 6.1
Red nucleus
nTPM: 7.1
2725 Female, age 75, unknown 8.2
1821 Female, age 72, unknown 7.5
2785 Male, age 18, unknown 7.3
1954 Female, age 42, unknown 7.2
2584 Male, age 75, left hemisphere 7.2
2769 Male, age 72, unknown 7.2
2503 Female, age 72, unknown 7.0
1865 Male, age 51, unknown 6.8
2227 Male, age 72, unknown 6.8
1904 Male, age 53, unknown 6.7
2823 Male, age 76, right hemisphere 6.4
2588 Male, age 74, left hemisphere 6.2
Substantia nigra
nTPM: 8.0
1851 Male, age 51, unknown 8.7
2665 Male, age 74, both hemispheres 8.7
1916 Female, age 42, unknown 8.3
1941 Male, age 53, unknown 8.3
1889 Female, age 72, unknown 8.2
2409 Female, age 72, unknown 8.0
2699 Male, age 18, unknown 7.8
2241 Male, age 72, unknown 7.7
2590 Female, age 75, unknown 7.7
2583 Male, age 75, right hemisphere 6.7
Superior colliculus
nTPM: 7.5
2668 Female, age 75, unknown 8.6
2261 Male, age 18, unknown 8.0
1796 Male, age 53, unknown 7.8
2087 Female, age 72, unknown 7.6
1913 Female, age 42, unknown 7.4
1839 Male, age 51, unknown 7.3
2664 Male, age 75, both hemispheres 7.3
2587 Male, age 74, left hemisphere 7.1
1995 Male, age 72, unknown 7.0
1895 Male, age 76, right hemisphere 6.9
Ventral tegmental area
nTPM: 7.8
2410 Female, age 72, unknown 8.5
1915 Female, age 42, unknown 8.1
2218 Male, age 76, both hemispheres 7.9
2021 Male, age 53, unknown 7.8
1942 Male, age 51, unknown 7.3
2223 Female, age 72, unknown 7.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.9
Samples: 139

Max nTPM: 24.4
Min nTPM: 1.0
Std nTPM: 3.6
Median nTPM: 10.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 24.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 21.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 20.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 18.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 16.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 16.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 16.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 16.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 16.2
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 16.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.3
FF:10158-103A5 76 years, female 8.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.9
Pig sample Sample description nTPM
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 20.1
Min nTPM: 13.0
Sample A Female 16.9
Sample B Female 13.0
Sample C Male 20.1
Sample D Male 14.6
Periaqueductal gray
nTPM: 13.6
Samples: 3

Max nTPM: 15.2
Min nTPM: 12.7
Sample B Female 12.7
Sample C Male 15.2
Sample D Male 12.9
Substantia nigra
nTPM: 15.2
Samples: 4

Max nTPM: 16.3
Min nTPM: 14.4
Sample A Female 16.3
Sample B Female 14.4
Sample C Male 15.3
Sample D Male 14.7
Superior colliculi
nTPM: 16.9
Samples: 4

Max nTPM: 19.3
Min nTPM: 14.8
Sample A Female 15.9
Sample B Female 17.5
Sample C Male 19.3
Sample D Male 14.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.8
Samples: 4

Max nTPM: 72.5
Min nTPM: 67.2
Sample A Male 72.5
Sample B Male 70.8
Sample C Female 67.2
Sample D Female 68.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
71232781 Antisense, RP_050503_01_G08, Mouse strain C57BL/6J (56 days, male) 7.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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