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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:36.0 nTPM
HPA:36.0 nTPM
GTEx:46.1 nTPM
FANTOM5:145.1 Scaled Tags Per Million
Pig:37.3 nTPM
Mouse:44.8 nTPM
Allen mouse:0.7 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003116Antibody HPA024694Antibody CAB004419
Glial cells Not detectedLowMedium
Neuronal cells MediumMediumHigh







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.3
2846 Female, age 79, unknown 38.3
2288 Male, age 75, left hemisphere 36.4
1781 Male, age 74, unknown 35.1
1857 Female, age 85, left hemisphere 34.7
2290 Female, age 72, unknown 33.5
2289 Male, age 61, right hemisphere 33.0
1854 Male, age 80, left hemisphere 32.5
2481 Female, age 94, left hemisphere 31.1
Claustrum
nTPM: 33.4
2568 Male, age 61, both hemispheres 36.0
2196 Female, age 79, unknown 33.9
2645 Female, age 72, unknown 33.9
2198 Male, age 80, both hemispheres 33.4
2284 Female, age 91, both hemispheres 33.3
1956 Male, age 74, unknown 33.0
2491 Male, age 75, both hemispheres 32.9
2392 Female, age 94, both hemispheres 32.5
2292 Female, age 85, both hemispheres 31.8
Globus pallidus, externus
nTPM: 29.4
2646 Male, age 61, right hemisphere 33.0
2567 Female, age 72, unknown 29.4
1996 Male, age 80, right hemisphere 29.2
2395 Male, age 75, both hemispheres 28.9
2772 Female, age 79, unknown 26.5
Globus pallidus, internus
nTPM: 31.5
2111 Female, age 85, right hemisphere 33.6
2778 Female, age 91, both hemispheres 33.4
2287 Male, age 75, right hemisphere 33.1
2566 Female, age 72, unknown 32.2
2483 Female, age 94, right hemisphere 30.2
2037 Male, age 80, right hemisphere 29.8
1818 Male, age 74, unknown 28.4
Nucleus accumbens
nTPM: 35.1
1856 Female, age 91, right hemisphere 38.0
2698 Female, age 72, unknown 38.0
2824 Male, age 61, right hemisphere 37.2
1783 Male, age 74, unknown 35.9
1806 Female, age 85, left hemisphere 35.2
2391 Female, age 94, left hemisphere 33.3
2286 Male, age 75, left hemisphere 32.0
2732 Male, age 80, right hemisphere 31.5
Nucleus basalis of Meynert
nTPM: 33.9
2393 Male, age 80, right hemisphere 38.0
2484 Female, age 94, left hemisphere 33.4
2821 Male, age 75, both hemispheres 32.7
2569 Male, age 61, both hemispheres 31.4
Nucleus of the diagonal band
nTPM: 35.8
1979 Male, age 74, unknown 38.4
2029 Male, age 61, right hemisphere 36.9
2195 Female, age 85, both hemispheres 36.3
1812 Female, age 91, both hemispheres 33.8
2775 Male, age 80, right hemisphere 33.7
Olfactory tubercle
nTPM: 35.8
2856 Male, age 75, right hemisphere 38.9
1846 Male, age 80, right hemisphere 35.7
2487 Female, age 94, left hemisphere 34.6
1998 Female, age 91, both hemispheres 33.9
Putamen
nTPM: 36.0
1829 Male, age 74, unknown 39.2
1838 Male, age 80, right hemisphere 37.7
2466 Female, age 79, unknown 37.2
1937 Female, age 91, right hemisphere 36.4
2489 Female, age 72, unknown 35.8
2647 Male, age 75, left hemisphere 34.6
2482 Female, age 94, left hemisphere 30.8
Septal nuclei
nTPM: 34.9
2629 Female, age 94, right hemisphere 39.8
2059 Female, age 85, both hemispheres 35.8
2394 Male, age 61, left hemisphere 34.5
2199 Male, age 80, right hemisphere 34.3
1960 Male, age 74, unknown 34.2
2031 Female, age 72, unknown 33.5
2009 Female, age 91, both hemispheres 32.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 46.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.7
Samples: 246

Max nTPM: 71.4
Min nTPM: 11.6
Std nTPM: 11.1
Median nTPM: 40.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 71.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 69.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 68.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 66.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 66.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 63.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 63.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 63.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 62.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 62.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 61.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.9
Samples: 246

Max nTPM: 89.4
Min nTPM: 12.1
Std nTPM: 13.3
Median nTPM: 41.0
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 89.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 81.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 78.8
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 78.7
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 78.4
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 75.0
GTEX-13112-0011-R6b-SM-5DUVK 50-59 years, male 74.9
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 73.5
GTEX-ZE7O-0011-R6a-SM-57WCI 50-59 years, female 72.6
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 72.4
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 71.0
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Brain - Putamen (basal ganglia)
Average nTPM: 46.1
Samples: 205

Max nTPM: 90.2
Min nTPM: 13.9
Std nTPM: 13.8
Median nTPM: 45.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 90.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 79.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 79.7
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 78.6
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 76.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 75.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 75.8
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 75.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 74.9
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 71.7
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 70.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 145.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 122.0
FF:10164-103B2 76 years, female 122.0
Globus pallidus
Scaled Tags Per Million: 141.7
FF:10175-103C4 60 years, female 169.7
FF:10161-103A8 76 years, female 113.8
Nucleus accumbens
Scaled Tags Per Million: 124.8
FF:10037-101F1 23-56 years, mixed 124.8
Putamen
Scaled Tags Per Million: 145.1
FF:10176-103C5 60 years, female 145.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.3
Pig sample Sample description nTPM
Caudate
nTPM: 30.7
Samples: 4

Max nTPM: 33.4
Min nTPM: 29.2
Sample A Female 29.2
Sample B Female 30.8
Sample C Male 33.4
Sample D Male 29.3
Putamen
nTPM: 37.3
Samples: 4

Max nTPM: 51.7
Min nTPM: 28.4
Sample A Female 28.4
Sample B Female 34.7
Sample C Male 51.7
Sample D Male 34.3
Septum
nTPM: 28.5
Samples: 4

Max nTPM: 30.6
Min nTPM: 24.1
Sample A Female 30.4
Sample B Female 30.6
Sample C Male 28.8
Sample D Male 24.1
Ventral pallidum
nTPM: 29.4
Samples: 4

Max nTPM: 35.0
Min nTPM: 25.8
Sample A Female 29.9
Sample B Female 35.0
Sample C Male 26.9
Sample D Male 25.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 44.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 44.8
Samples: 4

Max nTPM: 46.9
Min nTPM: 41.4
Sample A Male 45.3
Sample B Male 45.5
Sample C Female 46.9
Sample D Female 41.4
Septum
nTPM: 38.6
Samples: 4

Max nTPM: 42.7
Min nTPM: 37.1
Sample A Male 37.1
Sample B Male 37.2
Sample C Female 37.5
Sample D Female 42.7
Ventral forebrain
nTPM: 44.4
Samples: 4

Max nTPM: 46.9
Min nTPM: 41.2
Sample A Male 46.9
Sample B Male 42.7
Sample C Female 41.2
Sample D Female 46.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
1211 Antisense, RP_040324_01_E12, Mouse strain C57BL/6J (56 days, male) 0.5
1212 Antisense, RP_040324_01_E12, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.7
1211 Antisense, RP_040324_01_E12, Mouse strain C57BL/6J (56 days, male) 0.7
1212 Antisense, RP_040324_01_E12, Mouse strain C57BL/6J (56 days, male) 0.2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.