ABOUTMENU
HELP
NEWS
GPHN
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.3 nTPM
HPA:35.3 nTPM
GTEx:28.4 nTPM
FANTOM5:95.7 Scaled Tags Per Million
Pig:30.9 nTPM
Mouse:50.0 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.7
2219 Male, age 76, both hemispheres 34.2
1830 Male, age 51, unknown 32.0
1833 Male, age 53, unknown 31.8
2019 Male, age 18, unknown 31.7
2411 Female, age 72, unknown 30.7
2666 Male, age 74, left hemisphere 30.3
2586 Male, age 75, left hemisphere 30.1
1827 Male, age 72, unknown 29.6
1870 Female, age 42, unknown 29.4
2828 Female, age 72, unknown 27.5
Dorsal raphe nucleus
nTPM: 27.8
2047 Male, age 72, unknown 29.6
2750 Male, age 76, both hemispheres 28.4
2016 Female, age 72, unknown 27.9
1828 Male, age 53, unknown 27.8
2298 Female, age 72, unknown 25.3
Inferior colliculus
nTPM: 35.3
2849 Male, age 72, unknown 37.2
1848 Female, age 42, unknown 35.3
1890 Male, age 53, unknown 35.0
2097 Female, age 72, unknown 33.9
Median raphe nucleus
nTPM: 29.6
2220 Male, age 76, midline 29.6
Pedunculopontine tegmental nucleus
nTPM: 30.9
1921 Female, age 85, both hemispheres 33.9
2334 Male, age 80, both hemispheres 31.2
2338 Male, age 61, both hemispheres 27.8
Periaquaductal grey, anterior
nTPM: 30.0
1947 Male, age 18, unknown 33.1
2502 Female, age 75, unknown 30.1
1795 Male, age 51, unknown 26.7
Periaquaductal grey, dorsal
nTPM: 30.2
1840 Male, age 53, unknown 31.1
2464 Female, age 72, unknown 30.7
1831 Male, age 72, unknown 29.7
2850 Male, age 76, both hemispheres 29.5
Periaquaductal grey, lateral
nTPM: 29.6
2140 Male, age 76, both hemispheres 30.5
2272 Male, age 74, both hemispheres 29.6
2053 Male, age 18, unknown 28.8
Pretectal area
nTPM: 31.5
1816 Male, age 51, unknown 35.3
1944 Female, age 72, unknown 34.5
1817 Female, age 42, unknown 33.7
1815 Male, age 53, unknown 32.3
2007 Male, age 72, unknown 32.2
2316 Male, age 76, right hemisphere 32.1
2667 Female, age 75, unknown 31.9
2407 Male, age 75, both hemispheres 30.2
2224 Female, age 72, unknown 29.3
2825 Male, age 18, unknown 28.5
2273 Male, age 74, both hemispheres 26.8
Red nucleus
nTPM: 31.7
2725 Female, age 75, unknown 34.8
2588 Male, age 74, left hemisphere 33.4
2823 Male, age 76, right hemisphere 32.8
1865 Male, age 51, unknown 32.0
2584 Male, age 75, left hemisphere 31.9
1821 Female, age 72, unknown 31.8
2503 Female, age 72, unknown 31.4
1954 Female, age 42, unknown 31.1
2785 Male, age 18, unknown 31.0
1904 Male, age 53, unknown 30.8
2769 Male, age 72, unknown 30.2
2227 Male, age 72, unknown 29.5
Substantia nigra
nTPM: 29.4
1889 Female, age 72, unknown 32.3
2241 Male, age 72, unknown 31.6
1941 Male, age 53, unknown 30.2
2583 Male, age 75, right hemisphere 29.9
2699 Male, age 18, unknown 29.7
2590 Female, age 75, unknown 29.6
1916 Female, age 42, unknown 28.6
1851 Male, age 51, unknown 28.2
2665 Male, age 74, both hemispheres 27.1
2409 Female, age 72, unknown 26.9
Superior colliculus
nTPM: 30.7
1895 Male, age 76, right hemisphere 34.3
2087 Female, age 72, unknown 33.5
2587 Male, age 74, left hemisphere 32.8
1839 Male, age 51, unknown 31.8
1913 Female, age 42, unknown 31.1
2261 Male, age 18, unknown 30.5
1796 Male, age 53, unknown 29.4
1995 Male, age 72, unknown 29.3
2664 Male, age 75, both hemispheres 27.6
2668 Female, age 75, unknown 27.1
Ventral tegmental area
nTPM: 30.1
2218 Male, age 76, both hemispheres 34.9
2410 Female, age 72, unknown 30.3
2223 Female, age 72, unknown 29.7
1942 Male, age 51, unknown 28.6
2021 Male, age 53, unknown 28.6
1915 Female, age 42, unknown 28.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.4
Samples: 139

Max nTPM: 60.3
Min nTPM: 12.9
Std nTPM: 8.4
Median nTPM: 27.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 60.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 52.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 51.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 51.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 49.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 48.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 46.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 45.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 42.8
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 42.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 42.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 95.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 95.7
FF:10158-103A5 76 years, female 95.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.9
Pig sample Sample description nTPM
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 32.5
Min nTPM: 28.4
Sample A Female 28.4
Sample B Female 30.7
Sample C Male 32.5
Sample D Male 32.1
Periaqueductal gray
nTPM: 26.3
Samples: 3

Max nTPM: 27.8
Min nTPM: 24.7
Sample B Female 27.8
Sample C Male 26.3
Sample D Male 24.7
Substantia nigra
nTPM: 25.1
Samples: 4

Max nTPM: 26.0
Min nTPM: 23.4
Sample A Female 26.0
Sample B Female 23.4
Sample C Male 25.8
Sample D Male 25.2
Superior colliculi
nTPM: 30.8
Samples: 4

Max nTPM: 33.5
Min nTPM: 24.7
Sample A Female 32.6
Sample B Female 24.7
Sample C Male 33.5
Sample D Male 32.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.0
Samples: 4

Max nTPM: 53.6
Min nTPM: 46.7
Sample A Male 46.7
Sample B Male 51.3
Sample C Female 53.6
Sample D Female 48.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
1212 Antisense, RP_040324_01_E12, Mouse strain C57BL/6J (56 days, male) 0.2
1211 Antisense, RP_040324_01_E12, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.