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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB046032
Pigment epithelial cells
Not detected
Photoreceptor cells
Medium
Limiting membrane
Medium
Outer plexiform layer
High
Inner nuclear layer
Medium
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
High
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA061138
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Medium
Outer plexiform layer
High
Inner nuclear layer
Medium
Inner plexiform layer
Medium
Ganglion cells
Not detected
Nerve fiber layer
High
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM: 301.6
Min nTPM: 80.6
Std nTPM: 45.8
Median nTPM:
308_1
70 years, female
301.6
315_1
62 years, female
296.0
264_1
73 years, female
292.5
414_1
84 years, female
288.0
501_1
88 years, male
273.3
452_1
88 years, female
268.6
413_1
59 years, female
264.7
137_1
83 years, male
263.8
313_1
79 years, female
262.4
35_1
74 years, female
262.2
254_1
77 years, female
258.4
288_1
66 years, female
252.7
351_1
91 years, male
249.4
41_1
94 years, female
248.9
2_1
77 years, female
246.4
117_1
61 years, male
243.4
506_1
65 years, male
240.6
307_1
66 years, female
236.8
120_1
70 years, female
235.7
394_1
75 years, female
235.5
425_1
59 years, female
231.1
17_1
71 years, male
228.6
314_1
67 years, male
226.2
295_1
61 years, female
225.9
42_1
85 years, male
225.8
173_1
67 years, male
223.7
142_1
61 years, female
223.3
406_1
79 years, male
217.8
145_1
84 years, male
213.2
4_1
88 years, female
212.7
319_1
81 years, male
212.0
499_1
55 years, female
210.5
491_1
89 years, female
209.3
503_1
68 years, male
207.4
89_1
63 years, male
206.6
324_1
76 years, male
201.5
243_1
75 years, male
200.0
266_1
85 years, male
198.3
109_1
81 years, female
198.2
126_1
63 years, male
197.8
375_1
74 years, female
196.5
376_1
75 years, female
195.2
32_1
67 years, male
192.9
379_1
60 years, male
190.7
490_1
67 years, female
190.1
495_1
57 years, female
186.6
229_1
69 years, female
185.5
99_1
64 years, male
184.2
172_1
72 years, female
182.0
317_1
60 years, male
181.6
349_1
83 years, male
181.2
177_1
74 years, male
181.0
119_1
70 years, female
180.3
286_1
68 years, female
179.3
6_1
73 years, female
179.1
246_1
77 years, male
178.0
237_1
82 years, male
176.9
356_1
87 years, female
175.6
149_1
88 years, male
174.7
9_1
66 years, female
173.3
377_1
82 years, female
171.8
526_1
61 years, male
171.6
386_1
76 years, male
169.5
265_1
87 years, male
168.4
384_1
83 years, male
168.4
335_1
73 years, female
168.2
81_1
67 years, male
167.5
320_1
89 years, female
166.3
466_1
57 years, female
166.2
153_1
70 years, female
165.7
468_1
89 years, male
165.6
353_1
82 years, female
163.1
115_1
83 years, male
160.9
292_1
71 years, male
160.5
348_1
84 years, male
159.1
316_1
62 years, male
158.4
18_1
88 years, male
158.2
189_1
76 years, male
157.4
163_1
78 years, male
157.1
347_1
72 years, male
156.9
404_1
82 years, female
155.2
139_1
64 years, female
153.5
318_1
68 years, male
153.0
396_1
62 years, male
152.7
321_1
62 years, female
150.8
415_1
77 years, female
150.3
217_1
76 years, male
149.1
405_1
91 years, male
147.6
311_1
78 years, male
147.3
43_1
64 years, female
146.4
447_1
81 years, male
145.9
480_1
63 years, male
145.6
389_1
86 years, female
139.9
291_1
76 years, male
138.0
517_1
88 years, male
137.0
350_1
84 years, female
128.6
293_1
68 years, female
127.2
355_1
70 years, female
126.7
354_1
81 years, female
125.2
162_1
79 years, female
124.4
518_1
75 years, female
123.3
322_1
76 years, male
120.8
218_1
71 years, female
107.2
352_1
62 years, male
105.4
251_1
78 years, male
80.6
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.