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TRAPPC12
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:14.8 nTPM
HPA:14.8 nTPM
GTEx:25.9 nTPM
FANTOM5:44.5 Scaled Tags Per Million
Pig:10.7 nTPM
Mouse:40.4 nTPM
Allen mouse:4.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA034799
Glial cells Low
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.8
Sample id Sample description nTPM
Hippocampus
nTPM: 14.2
1898 Male, age 80, left hemisphere 16.6
2148 Female, age 91, left hemisphere 15.7
2529 Female, age 94, left hemisphere 15.1
1855 Male, age 76, left hemisphere 13.6
2621 Female, age 67, right hemisphere 13.2
1911 Female, age 85, right hemisphere 11.0
Dentate gyrus
nTPM: 13.8
2530 Female, age 94, left hemisphere 14.5
2010 Male, age 76, both hemispheres 14.2
2528 Male, age 74, both hemispheres 14.0
2531 Female, age 67, both hemispheres 13.9
1927 Female, age 91, both hemispheres 13.4
2246 Female, age 85, both hemispheres 12.6
Entorhinal gyrus
nTPM: 13.7
2764 Male, age 80, right hemisphere 16.9
1787 Male, age 76, left hemisphere 15.2
2117 Female, age 91, right hemisphere 13.9
1938 Female, age 85, left hemisphere 12.6
2686 Male, age 75, right hemisphere 12.5
2613 Female, age 94, left hemisphere 11.2
Hippocampus, CA1
nTPM: 14.8
2749 Male, age 80, left hemisphere 17.1
2527 Male, age 74, both hemispheres 16.0
2082 Female, age 91, right hemisphere 14.2
1873 Female, age 85, both hemispheres 13.7
2045 Male, age 76, both hemispheres 12.8
Hippocampus, CA2
nTPM: 14.2
1963 Male, age 80, left hemisphere 17.0
2249 Male, age 74, both hemispheres 15.5
1892 Male, age 76, both hemispheres 14.9
2437 Female, age 94, left hemisphere 14.0
2113 Female, age 91, right hemisphere 13.3
1940 Female, age 85, left hemisphere 10.8
Hippocampus, CA3
nTPM: 13.2
2620 Female, age 94, left hemisphere 15.5
2137 Male, age 80, left hemisphere 14.0
2436 Male, age 74, both hemispheres 13.5
1867 Male, age 76, both hemispheres 12.7
2861 Female, age 67, both hemispheres 12.6
1891 Female, age 85, both hemispheres 11.0
Parahippocampal cortex
nTPM: 12.7
1990 Female, age 91, right hemisphere 14.3
2532 Female, age 72, left hemisphere 13.7
2693 Female, age 94, both hemispheres 13.4
2250 Female, age 67, right hemisphere 13.3
1850 Male, age 80, both hemispheres 12.9
1933 Female, age 85, both hemispheres 12.6
2245 Female, age 91, both hemispheres 12.5
2018 Male, age 76, both hemispheres 11.8
2692 Male, age 74, both hemispheres 11.7
2622 Female, age 67, right hemisphere 11.3
Perirhinal gyrus
nTPM: 14.7
1794 Male, age 80, right hemisphere 17.5
2521 Female, age 94, right hemisphere 17.2
1847 Female, age 91, left hemisphere 14.5
1841 Female, age 85, right hemisphere 12.8
2848 Male, age 76, right hemisphere 11.6
Subiculum
nTPM: 12.9
2619 Male, age 74, both hemispheres 15.5
1977 Female, age 85, both hemispheres 14.2
2729 Female, age 91, right hemisphere 13.9
2438 Female, age 94, left hemisphere 12.8
1901 Male, age 80, both hemispheres 11.7
2042 Male, age 76, both hemispheres 9.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.9
Samples: 197

Max nTPM: 55.7
Min nTPM: 7.0
Std nTPM: 8.6
Median nTPM: 25.7
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 55.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 50.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 49.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 46.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 45.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 45.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 44.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 43.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 43.2
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 43.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 42.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.5
FF:10153-102I9 76 years, female 46.1
FF:10169-103B7 60 years, female 42.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 10.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 9.7
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.6
Sample A Female 10.6
Sample B Female 9.8
Sample C Male 8.6
Sample D Male 9.9
Entorhinal cortex
nTPM: 10.7
Samples: 4

Max nTPM: 11.6
Min nTPM: 10.0
Sample A Female 10.0
Sample B Female 10.3
Sample C Male 11.0
Sample D Male 11.6
Subiculum
nTPM: 9.6
Samples: 4

Max nTPM: 10.7
Min nTPM: 8.7
Sample A Female 10.7
Sample B Female 8.7
Sample C Male 9.5
Sample D Male 9.4
Ventral hippocampus
nTPM: 10.0
Samples: 4

Max nTPM: 11.3
Min nTPM: 8.7
Sample A Female 8.9
Sample B Female 8.7
Sample C Male 11.3
Sample D Male 11.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 40.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 38.1
Samples: 4

Max nTPM: 40.8
Min nTPM: 35.8
Sample A Male 38.6
Sample B Male 40.8
Sample C Female 35.8
Sample D Female 37.2
Hippocampal formation
nTPM: 40.4
Samples: 4

Max nTPM: 43.0
Min nTPM: 38.6
Sample A Male 40.7
Sample B Male 39.3
Sample C Female 43.0
Sample D Female 38.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.1
68498836 Antisense, RP_050113_02_D10, Mouse strain C57BL/6J (56 days, male) 4.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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