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TRAPPC12
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.1 nTPM
HPA:14.1 nTPM
GTEx:25.6 nTPM
FANTOM5:39.9 Scaled Tags Per Million
Pig:11.3 nTPM
Mouse:39.2 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.5
2411 Female, age 72, unknown 14.6
2019 Male, age 18, unknown 14.3
2219 Male, age 76, both hemispheres 13.6
1827 Male, age 72, unknown 13.0
1833 Male, age 53, unknown 12.8
2828 Female, age 72, unknown 12.6
1870 Female, age 42, unknown 12.5
1830 Male, age 51, unknown 11.6
2586 Male, age 75, left hemisphere 11.0
2666 Male, age 74, left hemisphere 8.6
Dorsal raphe nucleus
nTPM: 12.9
2750 Male, age 76, both hemispheres 14.8
2298 Female, age 72, unknown 13.6
1828 Male, age 53, unknown 13.4
2047 Male, age 72, unknown 12.3
2016 Female, age 72, unknown 10.6
Inferior colliculus
nTPM: 13.2
2097 Female, age 72, unknown 13.7
1890 Male, age 53, unknown 13.3
1848 Female, age 42, unknown 13.2
2849 Male, age 72, unknown 12.7
Median raphe nucleus
nTPM: 13.7
2220 Male, age 76, midline 13.7
Pedunculopontine tegmental nucleus
nTPM: 11.9
1921 Female, age 85, both hemispheres 12.9
2334 Male, age 80, both hemispheres 12.3
2338 Male, age 61, both hemispheres 10.6
Periaquaductal grey, anterior
nTPM: 13.9
1795 Male, age 51, unknown 14.4
1947 Male, age 18, unknown 13.7
2502 Female, age 75, unknown 13.7
Periaquaductal grey, dorsal
nTPM: 11.8
2464 Female, age 72, unknown 12.7
1840 Male, age 53, unknown 12.4
1831 Male, age 72, unknown 11.2
2850 Male, age 76, both hemispheres 11.1
Periaquaductal grey, lateral
nTPM: 12.4
2272 Male, age 74, both hemispheres 15.0
2140 Male, age 76, both hemispheres 12.0
2053 Male, age 18, unknown 10.1
Pretectal area
nTPM: 14.1
2007 Male, age 72, unknown 16.8
2273 Male, age 74, both hemispheres 15.9
1944 Female, age 72, unknown 15.6
1816 Male, age 51, unknown 15.5
1817 Female, age 42, unknown 15.4
2667 Female, age 75, unknown 14.2
2316 Male, age 76, right hemisphere 13.5
2224 Female, age 72, unknown 13.3
1815 Male, age 53, unknown 12.8
2825 Male, age 18, unknown 11.5
2407 Male, age 75, both hemispheres 10.8
Red nucleus
nTPM: 13.6
2785 Male, age 18, unknown 14.8
1821 Female, age 72, unknown 14.5
2769 Male, age 72, unknown 14.4
2503 Female, age 72, unknown 14.3
2227 Male, age 72, unknown 14.1
2725 Female, age 75, unknown 13.9
1904 Male, age 53, unknown 13.7
1954 Female, age 42, unknown 13.1
1865 Male, age 51, unknown 12.8
2823 Male, age 76, right hemisphere 12.8
2588 Male, age 74, left hemisphere 12.4
2584 Male, age 75, left hemisphere 12.2
Substantia nigra
nTPM: 14.1
1916 Female, age 42, unknown 18.9
1889 Female, age 72, unknown 15.5
1851 Male, age 51, unknown 14.8
2699 Male, age 18, unknown 14.2
1941 Male, age 53, unknown 13.9
2583 Male, age 75, right hemisphere 13.3
2241 Male, age 72, unknown 13.0
2665 Male, age 74, both hemispheres 13.0
2590 Female, age 75, unknown 12.9
2409 Female, age 72, unknown 11.9
Superior colliculus
nTPM: 13.1
2261 Male, age 18, unknown 15.2
1796 Male, age 53, unknown 14.7
2087 Female, age 72, unknown 14.3
2668 Female, age 75, unknown 14.0
2587 Male, age 74, left hemisphere 13.8
1895 Male, age 76, right hemisphere 13.1
1839 Male, age 51, unknown 12.8
1995 Male, age 72, unknown 11.6
2664 Male, age 75, both hemispheres 11.3
1913 Female, age 42, unknown 10.3
Ventral tegmental area
nTPM: 14.0
2218 Male, age 76, both hemispheres 16.7
2410 Female, age 72, unknown 16.0
1915 Female, age 42, unknown 14.4
1942 Male, age 51, unknown 13.1
2223 Female, age 72, unknown 12.1
2021 Male, age 53, unknown 11.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.6
Samples: 139

Max nTPM: 51.3
Min nTPM: 9.7
Std nTPM: 8.2
Median nTPM: 25.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 51.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 45.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 43.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 42.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 41.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 40.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 40.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 39.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 39.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 39.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.9
FF:10158-103A5 76 years, female 39.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.3
Pig sample Sample description nTPM
Midbrain
nTPM: 11.3
Samples: 4

Max nTPM: 14.6
Min nTPM: 9.1
Sample A Female 9.3
Sample B Female 9.1
Sample C Male 14.6
Sample D Male 12.0
Periaqueductal gray
nTPM: 9.2
Samples: 3

Max nTPM: 9.4
Min nTPM: 9.0
Sample B Female 9.2
Sample C Male 9.0
Sample D Male 9.4
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.0
Sample A Female 10.4
Sample B Female 9.0
Sample C Male 11.6
Sample D Male 10.9
Superior colliculi
nTPM: 10.9
Samples: 4

Max nTPM: 12.7
Min nTPM: 8.7
Sample A Female 9.8
Sample B Female 8.7
Sample C Male 12.2
Sample D Male 12.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.2
Samples: 4

Max nTPM: 41.2
Min nTPM: 37.3
Sample A Male 39.4
Sample B Male 37.3
Sample C Female 41.2
Sample D Female 38.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
68498836 Antisense, RP_050113_02_D10, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.