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ISG20
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.0 nTPM
HPA:9.0 nTPM
GTEx:9.4 nTPM
FANTOM5:8.7 Scaled Tags Per Million
Pig:1.3 nTPM
Mouse:1.4 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 6.3
1781 Male, age 74, unknown 7.6
2846 Female, age 79, unknown 6.6
2288 Male, age 75, left hemisphere 6.5
2481 Female, age 94, left hemisphere 6.5
1854 Male, age 80, left hemisphere 6.2
2290 Female, age 72, unknown 6.2
1857 Female, age 85, left hemisphere 5.7
2289 Male, age 61, right hemisphere 5.4
Claustrum
nTPM: 6.8
2292 Female, age 85, both hemispheres 9.5
2196 Female, age 79, unknown 7.1
1956 Male, age 74, unknown 7.0
2198 Male, age 80, both hemispheres 6.8
2284 Female, age 91, both hemispheres 6.6
2645 Female, age 72, unknown 6.6
2392 Female, age 94, both hemispheres 6.0
2568 Male, age 61, both hemispheres 6.0
2491 Male, age 75, both hemispheres 5.8
Globus pallidus, externus
nTPM: 8.6
2567 Female, age 72, unknown 10.3
1996 Male, age 80, right hemisphere 9.0
2772 Female, age 79, unknown 9.0
2395 Male, age 75, both hemispheres 7.5
2646 Male, age 61, right hemisphere 7.1
Globus pallidus, internus
nTPM: 9.0
2566 Female, age 72, unknown 10.7
1818 Male, age 74, unknown 9.4
2111 Female, age 85, right hemisphere 9.4
2037 Male, age 80, right hemisphere 9.1
2483 Female, age 94, right hemisphere 8.3
2287 Male, age 75, right hemisphere 8.2
2778 Female, age 91, both hemispheres 7.8
Nucleus accumbens
nTPM: 6.4
2732 Male, age 80, right hemisphere 7.9
2698 Female, age 72, unknown 7.2
2286 Male, age 75, left hemisphere 6.7
2391 Female, age 94, left hemisphere 6.6
1783 Male, age 74, unknown 6.4
1806 Female, age 85, left hemisphere 5.7
2824 Male, age 61, right hemisphere 5.3
1856 Female, age 91, right hemisphere 5.2
Nucleus basalis of Meynert
nTPM: 6.8
2569 Male, age 61, both hemispheres 7.7
2821 Male, age 75, both hemispheres 6.7
2484 Female, age 94, left hemisphere 6.6
2393 Male, age 80, right hemisphere 6.4
Nucleus of the diagonal band
nTPM: 5.3
1979 Male, age 74, unknown 5.7
1812 Female, age 91, both hemispheres 5.5
2775 Male, age 80, right hemisphere 5.2
2029 Male, age 61, right hemisphere 5.1
2195 Female, age 85, both hemispheres 5.0
Olfactory tubercle
nTPM: 5.4
2487 Female, age 94, left hemisphere 5.7
2856 Male, age 75, right hemisphere 5.4
1846 Male, age 80, right hemisphere 5.3
1998 Female, age 91, both hemispheres 5.3
Putamen
nTPM: 6.8
2489 Female, age 72, unknown 8.2
2482 Female, age 94, left hemisphere 7.2
2647 Male, age 75, left hemisphere 7.0
2466 Female, age 79, unknown 6.7
1829 Male, age 74, unknown 6.4
1838 Male, age 80, right hemisphere 6.1
1937 Female, age 91, right hemisphere 5.8
Septal nuclei
nTPM: 5.8
2394 Male, age 61, left hemisphere 7.4
2199 Male, age 80, right hemisphere 6.5
2031 Female, age 72, unknown 5.5
2629 Female, age 94, right hemisphere 5.5
1960 Male, age 74, unknown 5.3
2059 Female, age 85, both hemispheres 5.3
2009 Female, age 91, both hemispheres 5.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.7
Samples: 246

Max nTPM: 41.5
Min nTPM: 0.5
Std nTPM: 5.8
Median nTPM: 4.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 41.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 39.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 38.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 33.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 30.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 27.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 22.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 22.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 18.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 16.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 16.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.7
Samples: 246

Max nTPM: 88.3
Min nTPM: 0.7
Std nTPM: 7.9
Median nTPM: 3.8
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 88.3
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 55.5
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 40.5
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 30.4
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 26.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 26.1
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 24.8
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 23.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 21.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 19.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 18.7
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Brain - Putamen (basal ganglia)
Average nTPM: 9.4
Samples: 205

Max nTPM: 67.1
Min nTPM: 1.1
Std nTPM: 8.4
Median nTPM: 6.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 67.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 58.3
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 48.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 42.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 36.8
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 36.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 30.5
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 26.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 22.3
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 21.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 21.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.1
FF:10164-103B2 76 years, female 2.1
Globus pallidus
Scaled Tags Per Million: 8.7
FF:10175-103C4 60 years, female 12.6
FF:10161-103A8 76 years, female 4.8
Nucleus accumbens
Scaled Tags Per Million: 1.4
FF:10037-101F1 23-56 years, mixed 1.4
Putamen
Scaled Tags Per Million: 4.2
FF:10176-103C5 60 years, female 4.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.3
Pig sample Sample description nTPM
Caudate
nTPM: 1.2
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.9
Sample A Female 1.2
Sample B Female 1.3
Sample C Male 0.9
Sample D Male 1.5
Putamen
nTPM: 1.3
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.8
Sample A Female 1.3
Sample B Female 1.5
Sample C Male 0.8
Sample D Male 1.4
Septum
nTPM: 1.2
Samples: 4

Max nTPM: 1.4
Min nTPM: 1.1
Sample A Female 1.2
Sample B Female 1.2
Sample C Male 1.4
Sample D Male 1.1
Ventral pallidum
nTPM: 1.3
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.0
Sample A Female 1.3
Sample B Female 1.0
Sample C Male 1.3
Sample D Male 1.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.2
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 1.5
Sample C Female 1.9
Sample D Female 0.9
Septum
nTPM: 1.4
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.1
Sample A Male 1.1
Sample B Male 1.6
Sample C Female 1.3
Sample D Female 1.5
Ventral forebrain
nTPM: 1.4
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.0
Sample A Male 1.0
Sample B Male 2.0
Sample C Female 1.5
Sample D Female 1.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68498696 Antisense, RP_050113_02_C10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
68498696 Antisense, RP_050113_02_C10, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.