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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.8 nTPM
HPA:60.8 nTPM
GTEx:45.5 nTPM
FANTOM5:114.2 Scaled Tags Per Million
Pig:76.7 nTPM
Mouse:50.1 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.6
2828 Female, age 72, unknown 49.8
1870 Female, age 42, unknown 45.7
2586 Male, age 75, left hemisphere 45.4
2219 Male, age 76, both hemispheres 43.5
2666 Male, age 74, left hemisphere 40.6
1833 Male, age 53, unknown 40.4
1827 Male, age 72, unknown 39.9
2411 Female, age 72, unknown 38.5
1830 Male, age 51, unknown 37.2
2019 Male, age 18, unknown 24.6
Dorsal raphe nucleus
nTPM: 59.3
2047 Male, age 72, unknown 72.7
2016 Female, age 72, unknown 64.0
2298 Female, age 72, unknown 63.1
1828 Male, age 53, unknown 50.2
2750 Male, age 76, both hemispheres 46.5
Inferior colliculus
nTPM: 44.6
1848 Female, age 42, unknown 51.2
2849 Male, age 72, unknown 48.1
2097 Female, age 72, unknown 40.8
1890 Male, age 53, unknown 38.1
Median raphe nucleus
nTPM: 54.1
2220 Male, age 76, midline 54.1
Pedunculopontine tegmental nucleus
nTPM: 41.3
1921 Female, age 85, both hemispheres 46.7
2334 Male, age 80, both hemispheres 44.7
2338 Male, age 61, both hemispheres 32.6
Periaquaductal grey, anterior
nTPM: 54.9
1795 Male, age 51, unknown 60.4
1947 Male, age 18, unknown 57.9
2502 Female, age 75, unknown 46.4
Periaquaductal grey, dorsal
nTPM: 60.8
1840 Male, age 53, unknown 76.8
2850 Male, age 76, both hemispheres 67.7
2464 Female, age 72, unknown 51.0
1831 Male, age 72, unknown 47.9
Periaquaductal grey, lateral
nTPM: 58.9
2053 Male, age 18, unknown 59.8
2140 Male, age 76, both hemispheres 59.3
2272 Male, age 74, both hemispheres 57.7
Pretectal area
nTPM: 46.5
2273 Male, age 74, both hemispheres 70.3
2825 Male, age 18, unknown 65.3
2224 Female, age 72, unknown 64.9
2667 Female, age 75, unknown 47.9
2316 Male, age 76, right hemisphere 41.8
1944 Female, age 72, unknown 41.6
1817 Female, age 42, unknown 39.1
1815 Male, age 53, unknown 37.9
1816 Male, age 51, unknown 36.2
2407 Male, age 75, both hemispheres 35.9
2007 Male, age 72, unknown 30.4
Red nucleus
nTPM: 36.3
2725 Female, age 75, unknown 46.5
1954 Female, age 42, unknown 41.1
2227 Male, age 72, unknown 39.0
2503 Female, age 72, unknown 39.0
2769 Male, age 72, unknown 38.8
1821 Female, age 72, unknown 36.5
1865 Male, age 51, unknown 36.4
1904 Male, age 53, unknown 35.6
2823 Male, age 76, right hemisphere 33.5
2588 Male, age 74, left hemisphere 32.7
2584 Male, age 75, left hemisphere 28.4
2785 Male, age 18, unknown 28.2
Substantia nigra
nTPM: 38.3
2699 Male, age 18, unknown 62.0
1916 Female, age 42, unknown 40.7
1851 Male, age 51, unknown 39.4
1889 Female, age 72, unknown 37.0
2583 Male, age 75, right hemisphere 36.6
2241 Male, age 72, unknown 35.0
1941 Male, age 53, unknown 34.9
2409 Female, age 72, unknown 33.2
2590 Female, age 75, unknown 32.9
2665 Male, age 74, both hemispheres 31.1
Superior colliculus
nTPM: 44.9
1995 Male, age 72, unknown 55.5
2664 Male, age 75, both hemispheres 53.1
1796 Male, age 53, unknown 45.5
1839 Male, age 51, unknown 44.6
2587 Male, age 74, left hemisphere 44.0
2261 Male, age 18, unknown 42.5
1913 Female, age 42, unknown 42.4
2668 Female, age 75, unknown 41.8
2087 Female, age 72, unknown 40.5
1895 Male, age 76, right hemisphere 39.4
Ventral tegmental area
nTPM: 43.6
2021 Male, age 53, unknown 55.8
1942 Male, age 51, unknown 47.0
1915 Female, age 42, unknown 46.2
2218 Male, age 76, both hemispheres 40.7
2223 Female, age 72, unknown 38.1
2410 Female, age 72, unknown 34.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.5
Samples: 139

Max nTPM: 158.9
Min nTPM: 5.4
Std nTPM: 24.0
Median nTPM: 42.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 158.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 156.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 117.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 96.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 89.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 87.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 85.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 81.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 81.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 78.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 77.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 114.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 114.2
FF:10158-103A5 76 years, female 114.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 76.7
Pig sample Sample description nTPM
Midbrain
nTPM: 76.7
Samples: 4

Max nTPM: 131.0
Min nTPM: 44.6
Sample A Female 131.0
Sample B Female 44.6
Sample C Male 64.5
Sample D Male 66.6
Periaqueductal gray
nTPM: 71.2
Samples: 3

Max nTPM: 83.0
Min nTPM: 53.6
Sample B Female 53.6
Sample C Male 83.0
Sample D Male 76.9
Substantia nigra
nTPM: 62.6
Samples: 4

Max nTPM: 71.5
Min nTPM: 54.2
Sample A Female 71.5
Sample B Female 55.1
Sample C Male 54.2
Sample D Male 69.6
Superior colliculi
nTPM: 48.5
Samples: 4

Max nTPM: 66.8
Min nTPM: 29.8
Sample A Female 66.8
Sample B Female 29.8
Sample C Male 42.7
Sample D Male 54.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.1
Samples: 4

Max nTPM: 53.8
Min nTPM: 46.8
Sample A Male 46.8
Sample B Male 49.2
Sample C Female 53.8
Sample D Female 50.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
73497044 Antisense, RP_051019_04_B09, Mouse strain C57BL/6J (56 days, male) 3.2
74357547 Antisense, RP_051019_04_B09, Mouse strain C57BL/6J (56 days, male) 1.4
70794013 Antisense, RP_050712_01_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.