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CSDC2
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:30.5 nTPM
HPA:30.5 nTPM
GTEx:29.0 nTPM
FANTOM5:31.4 Scaled Tags Per Million
Pig:32.4 nTPM
Mouse:79.1 nTPM
Allen mouse:6.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003073
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.5
Sample id Sample description nTPM
Hippocampus
nTPM: 27.7
2621 Female, age 67, right hemisphere 36.1
1855 Male, age 76, left hemisphere 31.2
2529 Female, age 94, left hemisphere 30.7
2148 Female, age 91, left hemisphere 29.2
1898 Male, age 80, left hemisphere 20.8
1911 Female, age 85, right hemisphere 18.3
Dentate gyrus
nTPM: 25.4
2531 Female, age 67, both hemispheres 31.7
2010 Male, age 76, both hemispheres 30.6
1927 Female, age 91, both hemispheres 26.4
2530 Female, age 94, left hemisphere 25.4
2528 Male, age 74, both hemispheres 20.3
2246 Female, age 85, both hemispheres 18.2
Entorhinal gyrus
nTPM: 15.3
2686 Male, age 75, right hemisphere 20.3
2117 Female, age 91, right hemisphere 16.4
2613 Female, age 94, left hemisphere 14.9
1787 Male, age 76, left hemisphere 14.6
2764 Male, age 80, right hemisphere 13.0
1938 Female, age 85, left hemisphere 12.4
Hippocampus, CA1
nTPM: 30.5
2045 Male, age 76, both hemispheres 39.5
2527 Male, age 74, both hemispheres 36.0
2749 Male, age 80, left hemisphere 33.6
1873 Female, age 85, both hemispheres 24.0
2082 Female, age 91, right hemisphere 19.5
Hippocampus, CA2
nTPM: 23.2
1963 Male, age 80, left hemisphere 35.3
1892 Male, age 76, both hemispheres 26.9
2437 Female, age 94, left hemisphere 24.1
2113 Female, age 91, right hemisphere 22.0
2249 Male, age 74, both hemispheres 21.4
1940 Female, age 85, left hemisphere 9.4
Hippocampus, CA3
nTPM: 27.9
2861 Female, age 67, both hemispheres 48.2
2620 Female, age 94, left hemisphere 32.3
1867 Male, age 76, both hemispheres 31.2
2137 Male, age 80, left hemisphere 21.7
2436 Male, age 74, both hemispheres 18.6
1891 Female, age 85, both hemispheres 15.6
Parahippocampal cortex
nTPM: 14.9
2018 Male, age 76, both hemispheres 22.7
2250 Female, age 67, right hemisphere 20.9
2245 Female, age 91, both hemispheres 17.2
2693 Female, age 94, both hemispheres 15.7
1990 Female, age 91, right hemisphere 15.0
2692 Male, age 74, both hemispheres 14.4
2622 Female, age 67, right hemisphere 13.9
1933 Female, age 85, both hemispheres 12.8
2532 Female, age 72, left hemisphere 8.6
1850 Male, age 80, both hemispheres 8.1
Perirhinal gyrus
nTPM: 12.6
1847 Female, age 91, left hemisphere 18.2
2521 Female, age 94, right hemisphere 16.3
2848 Male, age 76, right hemisphere 11.3
1794 Male, age 80, right hemisphere 9.5
1841 Female, age 85, right hemisphere 7.8
Subiculum
nTPM: 17.8
2729 Female, age 91, right hemisphere 22.6
2438 Female, age 94, left hemisphere 21.8
2042 Male, age 76, both hemispheres 18.1
2619 Male, age 74, both hemispheres 18.0
1901 Male, age 80, both hemispheres 13.7
1977 Female, age 85, both hemispheres 12.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 29.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.0
Samples: 197

Max nTPM: 74.8
Min nTPM: 4.5
Std nTPM: 14.3
Median nTPM: 27.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 74.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 68.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 65.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 64.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 64.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 62.3
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 62.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 61.7
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 59.1
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 55.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 54.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.4
FF:10169-103B7 60 years, female 37.6
FF:10153-102I9 76 years, female 25.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 32.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 22.7
Samples: 4

Max nTPM: 25.4
Min nTPM: 20.0
Sample A Female 24.5
Sample B Female 25.4
Sample C Male 20.0
Sample D Male 20.7
Entorhinal cortex
nTPM: 29.6
Samples: 4

Max nTPM: 33.1
Min nTPM: 25.1
Sample A Female 28.9
Sample B Female 31.1
Sample C Male 33.1
Sample D Male 25.1
Subiculum
nTPM: 32.4
Samples: 4

Max nTPM: 44.8
Min nTPM: 22.5
Sample A Female 44.8
Sample B Female 32.6
Sample C Male 29.5
Sample D Male 22.5
Ventral hippocampus
nTPM: 30.2
Samples: 4

Max nTPM: 42.4
Min nTPM: 21.4
Sample A Female 27.3
Sample B Female 29.8
Sample C Male 42.4
Sample D Male 21.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 79.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 73.1
Samples: 4

Max nTPM: 78.9
Min nTPM: 67.6
Sample A Male 77.1
Sample B Male 67.6
Sample C Female 78.9
Sample D Female 68.6
Hippocampal formation
nTPM: 79.1
Samples: 4

Max nTPM: 83.0
Min nTPM: 76.2
Sample A Male 80.6
Sample B Male 76.2
Sample C Female 76.6
Sample D Female 83.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.3
70634234 Antisense, RP_050725_01_E08, Mouse strain C57BL/6J (56 days, male) 9.7
638710 Antisense, RP_040831_02_C08, Mouse strain C57BL/6J (56 days, male) 5.3
77910723 Antisense, RP_070208_04_F07, Mouse strain C57BL/6J (56 days, male) 3.8
77887884 Antisense, RP_070208_04_F07, Mouse strain C57BL/6J (56 days, male) 2.9

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.