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COPS9
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:376.2 nTPM
HPA:376.2 nTPM
GTEx:426.1 nTPM
FANTOM5:97.7 Scaled Tags Per Million
Pig:143.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 376.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 360.3
2019 Male, age 18, unknown 389.4
2828 Female, age 72, unknown 366.1
1870 Female, age 42, unknown 365.7
2411 Female, age 72, unknown 363.5
1827 Male, age 72, unknown 363.0
2586 Male, age 75, left hemisphere 360.9
1830 Male, age 51, unknown 351.8
1833 Male, age 53, unknown 349.7
2219 Male, age 76, both hemispheres 347.2
2666 Male, age 74, left hemisphere 345.4
Dorsal raphe nucleus
nTPM: 360.6
2298 Female, age 72, unknown 373.3
2750 Male, age 76, both hemispheres 364.3
1828 Male, age 53, unknown 358.6
2047 Male, age 72, unknown 356.1
2016 Female, age 72, unknown 350.6
Inferior colliculus
nTPM: 356.7
2097 Female, age 72, unknown 366.7
1890 Male, age 53, unknown 364.0
1848 Female, age 42, unknown 351.1
2849 Male, age 72, unknown 344.9
Median raphe nucleus
nTPM: 359.7
2220 Male, age 76, midline 359.7
Pedunculopontine tegmental nucleus
nTPM: 358.8
1921 Female, age 85, both hemispheres 360.2
2334 Male, age 80, both hemispheres 359.2
2338 Male, age 61, both hemispheres 357.1
Periaquaductal grey, anterior
nTPM: 357.2
1795 Male, age 51, unknown 363.0
1947 Male, age 18, unknown 354.8
2502 Female, age 75, unknown 353.8
Periaquaductal grey, dorsal
nTPM: 353.1
2850 Male, age 76, both hemispheres 356.6
1831 Male, age 72, unknown 356.4
1840 Male, age 53, unknown 353.6
2464 Female, age 72, unknown 345.6
Periaquaductal grey, lateral
nTPM: 355.2
2272 Male, age 74, both hemispheres 360.8
2053 Male, age 18, unknown 354.5
2140 Male, age 76, both hemispheres 350.3
Pretectal area
nTPM: 376.2
2007 Male, age 72, unknown 396.8
1817 Female, age 42, unknown 394.0
1816 Male, age 51, unknown 390.7
2273 Male, age 74, both hemispheres 386.9
1944 Female, age 72, unknown 384.6
1815 Male, age 53, unknown 379.9
2667 Female, age 75, unknown 374.8
2316 Male, age 76, right hemisphere 362.3
2224 Female, age 72, unknown 360.1
2407 Male, age 75, both hemispheres 356.1
2825 Male, age 18, unknown 351.8
Red nucleus
nTPM: 367.2
2785 Male, age 18, unknown 383.3
1821 Female, age 72, unknown 377.5
2503 Female, age 72, unknown 374.9
2823 Male, age 76, right hemisphere 369.9
1904 Male, age 53, unknown 368.9
1865 Male, age 51, unknown 367.8
2588 Male, age 74, left hemisphere 365.4
2725 Female, age 75, unknown 365.4
2769 Male, age 72, unknown 362.6
2227 Male, age 72, unknown 362.4
1954 Female, age 42, unknown 357.3
2584 Male, age 75, left hemisphere 350.5
Substantia nigra
nTPM: 366.3
1889 Female, age 72, unknown 385.8
1916 Female, age 42, unknown 378.3
1851 Male, age 51, unknown 375.6
2590 Female, age 75, unknown 366.4
2241 Male, age 72, unknown 366.0
1941 Male, age 53, unknown 362.3
2409 Female, age 72, unknown 359.4
2665 Male, age 74, both hemispheres 358.9
2583 Male, age 75, right hemisphere 356.4
2699 Male, age 18, unknown 353.8
Superior colliculus
nTPM: 366.3
2587 Male, age 74, left hemisphere 378.2
2087 Female, age 72, unknown 375.3
1913 Female, age 42, unknown 371.1
1796 Male, age 53, unknown 370.8
2668 Female, age 75, unknown 368.6
1995 Male, age 72, unknown 367.4
2261 Male, age 18, unknown 365.3
1895 Male, age 76, right hemisphere 360.7
2664 Male, age 75, both hemispheres 356.4
1839 Male, age 51, unknown 348.9
Ventral tegmental area
nTPM: 364.3
1915 Female, age 42, unknown 370.3
2223 Female, age 72, unknown 366.9
2410 Female, age 72, unknown 365.7
1942 Male, age 51, unknown 363.7
2218 Male, age 76, both hemispheres 361.4
2021 Male, age 53, unknown 358.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 426.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 426.1
Samples: 139

Max nTPM: 1043.6
Min nTPM: 187.4
Std nTPM: 138.3
Median nTPM: 395.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1043.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1040.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 810.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 791.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 789.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 773.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 769.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 715.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 691.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 637.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 607.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.7
FF:10158-103A5 76 years, female 97.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 143.6
Pig sample Sample description nTPM
Midbrain
nTPM: 143.6
Samples: 4

Max nTPM: 215.6
Min nTPM: 92.7
Sample A Female 215.6
Sample B Female 138.1
Sample C Male 127.8
Sample D Male 92.7
Periaqueductal gray
nTPM: 91.7
Samples: 3

Max nTPM: 100.1
Min nTPM: 76.4
Sample B Female 100.1
Sample C Male 98.5
Sample D Male 76.4
Substantia nigra
nTPM: 129.8
Samples: 4

Max nTPM: 198.7
Min nTPM: 97.6
Sample A Female 198.7
Sample B Female 97.6
Sample C Male 119.9
Sample D Male 103.1
Superior colliculi
nTPM: 135.0
Samples: 4

Max nTPM: 179.6
Min nTPM: 99.8
Sample A Female 179.6
Sample B Female 99.8
Sample C Male 144.7
Sample D Male 115.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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