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RND1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.9 nTPM
HPA:26.9 nTPM
GTEx:22.7 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Pig:10.4 nTPM
Mouse:13.8 nTPM
Allen mouse:1.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 26.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 20.3
1781 Male, age 74, unknown 22.6
2481 Female, age 94, left hemisphere 22.3
1857 Female, age 85, left hemisphere 20.4
1854 Male, age 80, left hemisphere 20.0
2846 Female, age 79, unknown 19.5
2288 Male, age 75, left hemisphere 19.3
2290 Female, age 72, unknown 19.2
2289 Male, age 61, right hemisphere 19.1
Claustrum
nTPM: 20.6
2568 Male, age 61, both hemispheres 22.6
1956 Male, age 74, unknown 21.8
2491 Male, age 75, both hemispheres 21.7
2392 Female, age 94, both hemispheres 21.5
2198 Male, age 80, both hemispheres 21.3
2645 Female, age 72, unknown 20.7
2284 Female, age 91, both hemispheres 20.4
2196 Female, age 79, unknown 18.3
2292 Female, age 85, both hemispheres 16.9
Globus pallidus, externus
nTPM: 16.8
2772 Female, age 79, unknown 17.8
1996 Male, age 80, right hemisphere 17.1
2395 Male, age 75, both hemispheres 16.5
2646 Male, age 61, right hemisphere 16.4
2567 Female, age 72, unknown 16.0
Globus pallidus, internus
nTPM: 16.7
2483 Female, age 94, right hemisphere 19.2
1818 Male, age 74, unknown 18.0
2287 Male, age 75, right hemisphere 17.2
2037 Male, age 80, right hemisphere 16.0
2778 Female, age 91, both hemispheres 16.0
2566 Female, age 72, unknown 15.8
2111 Female, age 85, right hemisphere 15.1
Nucleus accumbens
nTPM: 19.3
1856 Female, age 91, right hemisphere 21.9
2286 Male, age 75, left hemisphere 20.5
2824 Male, age 61, right hemisphere 19.9
2698 Female, age 72, unknown 19.4
1783 Male, age 74, unknown 19.3
1806 Female, age 85, left hemisphere 19.1
2391 Female, age 94, left hemisphere 17.9
2732 Male, age 80, right hemisphere 16.5
Nucleus basalis of Meynert
nTPM: 18.1
2484 Female, age 94, left hemisphere 18.8
2393 Male, age 80, right hemisphere 18.3
2821 Male, age 75, both hemispheres 17.8
2569 Male, age 61, both hemispheres 17.3
Nucleus of the diagonal band
nTPM: 26.7
1812 Female, age 91, both hemispheres 32.4
2029 Male, age 61, right hemisphere 29.7
2775 Male, age 80, right hemisphere 29.1
2195 Female, age 85, both hemispheres 24.0
1979 Male, age 74, unknown 18.2
Olfactory tubercle
nTPM: 26.9
1998 Female, age 91, both hemispheres 30.5
1846 Male, age 80, right hemisphere 29.3
2856 Male, age 75, right hemisphere 26.0
2487 Female, age 94, left hemisphere 21.9
Putamen
nTPM: 19.1
1937 Female, age 91, right hemisphere 20.5
1838 Male, age 80, right hemisphere 20.4
2482 Female, age 94, left hemisphere 19.3
2647 Male, age 75, left hemisphere 19.2
1829 Male, age 74, unknown 18.7
2466 Female, age 79, unknown 18.6
2489 Female, age 72, unknown 16.7
Septal nuclei
nTPM: 23.7
2031 Female, age 72, unknown 33.3
2009 Female, age 91, both hemispheres 26.9
1960 Male, age 74, unknown 25.9
2629 Female, age 94, right hemisphere 25.1
2059 Female, age 85, both hemispheres 20.9
2199 Male, age 80, right hemisphere 17.3
2394 Male, age 61, left hemisphere 16.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.7
Samples: 246

Max nTPM: 237.2
Min nTPM: 6.8
Std nTPM: 22.0
Median nTPM: 17.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 237.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 162.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 131.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 117.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 92.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 89.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 75.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 70.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 68.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 61.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 61.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.6
Samples: 246

Max nTPM: 143.7
Min nTPM: 5.5
Std nTPM: 18.4
Median nTPM: 19.1
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 143.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 134.8
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 128.4
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 115.9
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 107.8
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 104.0
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 73.7
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 70.5
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 66.3
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 64.3
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 61.6
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Brain - Putamen (basal ganglia)
Average nTPM: 20.6
Samples: 205

Max nTPM: 118.6
Min nTPM: 5.6
Std nTPM: 14.0
Median nTPM: 17.6
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 118.6
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 89.7
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 88.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 77.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 76.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 74.3
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 65.9
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 63.6
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 49.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 47.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 39.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 11.6
FF:10164-103B2 76 years, female 11.6
Globus pallidus
Scaled Tags Per Million: 12.5
FF:10175-103C4 60 years, female 20.5
FF:10161-103A8 76 years, female 4.5
Nucleus accumbens
Scaled Tags Per Million: 20.2
FF:10037-101F1 23-56 years, mixed 20.2
Putamen
Scaled Tags Per Million: 36.9
FF:10176-103C5 60 years, female 36.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.4
Pig sample Sample description nTPM
Caudate
nTPM: 10.0
Samples: 4

Max nTPM: 10.9
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 10.2
Sample C Male 10.9
Sample D Male 9.5
Putamen
nTPM: 10.4
Samples: 4

Max nTPM: 12.5
Min nTPM: 9.4
Sample A Female 9.6
Sample B Female 9.4
Sample C Male 12.5
Sample D Male 10.0
Septum
nTPM: 9.2
Samples: 4

Max nTPM: 11.3
Min nTPM: 7.0
Sample A Female 10.6
Sample B Female 7.8
Sample C Male 11.3
Sample D Male 7.0
Ventral pallidum
nTPM: 9.1
Samples: 4

Max nTPM: 10.9
Min nTPM: 7.4
Sample A Female 10.3
Sample B Female 7.4
Sample C Male 10.9
Sample D Male 7.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 13.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.8
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.6
Sample A Male 6.6
Sample B Male 8.4
Sample C Female 7.9
Sample D Female 8.1
Septum
nTPM: 13.1
Samples: 4

Max nTPM: 18.6
Min nTPM: 10.3
Sample A Male 18.6
Sample B Male 10.3
Sample C Female 11.5
Sample D Female 12.1
Ventral forebrain
nTPM: 13.8
Samples: 4

Max nTPM: 16.9
Min nTPM: 11.7
Sample A Male 11.7
Sample B Male 16.9
Sample C Female 13.9
Sample D Female 12.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.7
69113620 Antisense, RP_050316_02_D11, Mouse strain C57BL/6J (56 days, male) 0.7
Pallidum
Expression energy: 1.1
69113620 Antisense, RP_050316_02_D11, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.