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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.6 nTPM
HPA:15.6 nTPM
GTEx:16.5 nTPM
FANTOM5:28.6 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:7.5 nTPM
Allen mouse:26.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.6
2586 Male, age 75, left hemisphere 16.9
2828 Female, age 72, unknown 15.8
2019 Male, age 18, unknown 15.4
2666 Male, age 74, left hemisphere 15.1
2411 Female, age 72, unknown 14.7
1827 Male, age 72, unknown 14.3
1870 Female, age 42, unknown 14.1
1830 Male, age 51, unknown 13.4
2219 Male, age 76, both hemispheres 13.4
1833 Male, age 53, unknown 13.2
Dorsal raphe nucleus
nTPM: 13.3
1828 Male, age 53, unknown 13.8
2298 Female, age 72, unknown 13.4
2750 Male, age 76, both hemispheres 13.4
2016 Female, age 72, unknown 13.2
2047 Male, age 72, unknown 12.9
Inferior colliculus
nTPM: 13.3
1848 Female, age 42, unknown 13.5
2097 Female, age 72, unknown 13.5
1890 Male, age 53, unknown 13.4
2849 Male, age 72, unknown 13.0
Median raphe nucleus
nTPM: 12.7
2220 Male, age 76, midline 12.7
Pedunculopontine tegmental nucleus
nTPM: 13.1
2334 Male, age 80, both hemispheres 13.5
1921 Female, age 85, both hemispheres 13.3
2338 Male, age 61, both hemispheres 12.5
Periaquaductal grey, anterior
nTPM: 13.4
1795 Male, age 51, unknown 14.0
2502 Female, age 75, unknown 13.5
1947 Male, age 18, unknown 12.6
Periaquaductal grey, dorsal
nTPM: 13.3
2464 Female, age 72, unknown 13.8
1831 Male, age 72, unknown 13.3
2850 Male, age 76, both hemispheres 13.1
1840 Male, age 53, unknown 12.9
Periaquaductal grey, lateral
nTPM: 14.0
2140 Male, age 76, both hemispheres 14.3
2053 Male, age 18, unknown 13.9
2272 Male, age 74, both hemispheres 13.8
Pretectal area
nTPM: 14.2
2316 Male, age 76, right hemisphere 15.3
2007 Male, age 72, unknown 15.1
1816 Male, age 51, unknown 14.6
1815 Male, age 53, unknown 14.4
1817 Female, age 42, unknown 14.4
2667 Female, age 75, unknown 14.4
1944 Female, age 72, unknown 14.1
2273 Male, age 74, both hemispheres 14.1
2407 Male, age 75, both hemispheres 13.6
2224 Female, age 72, unknown 13.4
2825 Male, age 18, unknown 13.3
Red nucleus
nTPM: 15.6
2785 Male, age 18, unknown 17.3
1904 Male, age 53, unknown 16.2
2769 Male, age 72, unknown 16.2
1954 Female, age 42, unknown 15.7
2227 Male, age 72, unknown 15.7
2725 Female, age 75, unknown 15.6
2503 Female, age 72, unknown 15.5
1865 Male, age 51, unknown 15.3
2584 Male, age 75, left hemisphere 15.3
2823 Male, age 76, right hemisphere 15.1
2588 Male, age 74, left hemisphere 14.9
1821 Female, age 72, unknown 14.3
Substantia nigra
nTPM: 13.4
2583 Male, age 75, right hemisphere 15.7
2665 Male, age 74, both hemispheres 14.2
1851 Male, age 51, unknown 14.1
1916 Female, age 42, unknown 14.1
1889 Female, age 72, unknown 13.5
2699 Male, age 18, unknown 13.5
1941 Male, age 53, unknown 13.4
2590 Female, age 75, unknown 13.2
2241 Male, age 72, unknown 11.7
2409 Female, age 72, unknown 10.8
Superior colliculus
nTPM: 14.2
1995 Male, age 72, unknown 15.6
1913 Female, age 42, unknown 15.2
2664 Male, age 75, both hemispheres 15.0
1796 Male, age 53, unknown 14.8
2087 Female, age 72, unknown 14.1
2668 Female, age 75, unknown 14.0
1839 Male, age 51, unknown 13.9
2261 Male, age 18, unknown 13.7
2587 Male, age 74, left hemisphere 13.0
1895 Male, age 76, right hemisphere 12.8
Ventral tegmental area
nTPM: 14.0
2410 Female, age 72, unknown 14.8
2223 Female, age 72, unknown 14.4
1942 Male, age 51, unknown 14.1
2021 Male, age 53, unknown 14.0
1915 Female, age 42, unknown 13.5
2218 Male, age 76, both hemispheres 13.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.5
Samples: 139

Max nTPM: 34.0
Min nTPM: 9.6
Std nTPM: 3.9
Median nTPM: 15.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 34.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 30.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 30.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 24.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 24.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 23.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 23.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 23.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 22.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 22.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 21.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.6
FF:10158-103A5 76 years, female 28.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Midbrain
nTPM: 4.8
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.0
Sample A Female 6.9
Sample B Female 4.0
Sample C Male 4.3
Sample D Male 4.1
Periaqueductal gray
nTPM: 4.1
Samples: 3

Max nTPM: 4.3
Min nTPM: 3.8
Sample B Female 4.3
Sample C Male 4.3
Sample D Male 3.8
Substantia nigra
nTPM: 4.8
Samples: 4

Max nTPM: 5.3
Min nTPM: 4.6
Sample A Female 5.3
Sample B Female 4.7
Sample C Male 4.6
Sample D Male 4.7
Superior colliculi
nTPM: 5.0
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.3
Sample A Female 5.6
Sample B Female 5.5
Sample C Male 4.6
Sample D Male 4.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.5
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.9
Sample A Male 8.6
Sample B Male 7.3
Sample C Female 6.9
Sample D Female 7.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 26.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 26.5
199202 Antisense, RP_040604_02_D04, Mouse strain C57BL/6J (56 days, male) 26.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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