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PSME3IP1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:93.9 nTPM
HPA:93.9 nTPM
GTEx:72.9 nTPM
FANTOM5:82.9 Scaled Tags Per Million
Pig:45.0 nTPM
Mouse:41.6 nTPM
Allen mouse:2.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA054382
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 93.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 76.8
2846 Female, age 79, unknown 82.3
2288 Male, age 75, left hemisphere 80.7
2289 Male, age 61, right hemisphere 77.0
1857 Female, age 85, left hemisphere 76.6
1781 Male, age 74, unknown 76.5
2290 Female, age 72, unknown 75.0
2481 Female, age 94, left hemisphere 73.4
1854 Male, age 80, left hemisphere 73.1
Claustrum
nTPM: 81.2
2292 Female, age 85, both hemispheres 84.9
2568 Male, age 61, both hemispheres 84.0
2198 Male, age 80, both hemispheres 82.0
1956 Male, age 74, unknown 81.7
2284 Female, age 91, both hemispheres 81.6
2392 Female, age 94, both hemispheres 81.2
2196 Female, age 79, unknown 80.7
2491 Male, age 75, both hemispheres 79.7
2645 Female, age 72, unknown 75.2
Globus pallidus, externus
nTPM: 93.9
2567 Female, age 72, unknown 100.2
2395 Male, age 75, both hemispheres 97.4
1996 Male, age 80, right hemisphere 93.3
2646 Male, age 61, right hemisphere 93.3
2772 Female, age 79, unknown 85.3
Globus pallidus, internus
nTPM: 92.8
2566 Female, age 72, unknown 100.4
2287 Male, age 75, right hemisphere 94.4
2483 Female, age 94, right hemisphere 94.3
2111 Female, age 85, right hemisphere 93.0
2778 Female, age 91, both hemispheres 92.7
2037 Male, age 80, right hemisphere 88.6
1818 Male, age 74, unknown 86.0
Nucleus accumbens
nTPM: 79.1
2698 Female, age 72, unknown 86.7
2391 Female, age 94, left hemisphere 80.6
2286 Male, age 75, left hemisphere 80.0
2824 Male, age 61, right hemisphere 79.1
2732 Male, age 80, right hemisphere 78.9
1806 Female, age 85, left hemisphere 78.0
1783 Male, age 74, unknown 76.2
1856 Female, age 91, right hemisphere 73.4
Nucleus basalis of Meynert
nTPM: 83.4
2569 Male, age 61, both hemispheres 94.8
2821 Male, age 75, both hemispheres 85.0
2484 Female, age 94, left hemisphere 77.6
2393 Male, age 80, right hemisphere 76.0
Nucleus of the diagonal band
nTPM: 74.1
1979 Male, age 74, unknown 78.8
1812 Female, age 91, both hemispheres 78.4
2029 Male, age 61, right hemisphere 72.4
2775 Male, age 80, right hemisphere 71.0
2195 Female, age 85, both hemispheres 69.8
Olfactory tubercle
nTPM: 72.7
1998 Female, age 91, both hemispheres 77.2
1846 Male, age 80, right hemisphere 71.6
2856 Male, age 75, right hemisphere 71.3
2487 Female, age 94, left hemisphere 70.5
Putamen
nTPM: 79.6
2647 Male, age 75, left hemisphere 83.7
1829 Male, age 74, unknown 82.5
1937 Female, age 91, right hemisphere 81.8
2489 Female, age 72, unknown 80.2
2482 Female, age 94, left hemisphere 79.8
2466 Female, age 79, unknown 77.3
1838 Male, age 80, right hemisphere 72.1
Septal nuclei
nTPM: 74.7
2031 Female, age 72, unknown 77.4
2629 Female, age 94, right hemisphere 77.4
2199 Male, age 80, right hemisphere 75.6
1960 Male, age 74, unknown 74.6
2059 Female, age 85, both hemispheres 74.2
2394 Male, age 61, left hemisphere 72.7
2009 Female, age 91, both hemispheres 71.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 72.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 69.2
Samples: 246

Max nTPM: 112.8
Min nTPM: 50.5
Std nTPM: 9.5
Median nTPM: 67.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 112.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 108.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 104.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 98.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 94.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 92.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 90.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 90.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 88.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 88.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 88.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 72.9
Samples: 246

Max nTPM: 111.8
Min nTPM: 44.4
Std nTPM: 11.9
Median nTPM: 72.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 111.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 105.4
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 103.9
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 103.7
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 102.6
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 101.5
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 100.5
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 98.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 97.6
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 96.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 93.9
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Brain - Putamen (basal ganglia)
Average nTPM: 72.8
Samples: 205

Max nTPM: 118.2
Min nTPM: 50.7
Std nTPM: 9.6
Median nTPM: 71.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 118.2
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 111.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 109.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 103.7
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 95.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 94.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 93.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 92.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 91.8
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 89.4
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 89.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 66.4
FF:10164-103B2 76 years, female 66.4
Globus pallidus
Scaled Tags Per Million: 70.4
FF:10161-103A8 76 years, female 73.8
FF:10175-103C4 60 years, female 67.0
Nucleus accumbens
Scaled Tags Per Million: 68.8
FF:10037-101F1 23-56 years, mixed 68.8
Putamen
Scaled Tags Per Million: 82.9
FF:10176-103C5 60 years, female 82.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.0
Pig sample Sample description nTPM
Caudate
nTPM: 37.3
Samples: 4

Max nTPM: 42.2
Min nTPM: 34.9
Sample A Female 35.5
Sample B Female 36.7
Sample C Male 42.2
Sample D Male 34.9
Putamen
nTPM: 45.0
Samples: 4

Max nTPM: 56.1
Min nTPM: 36.8
Sample A Female 44.0
Sample B Female 36.8
Sample C Male 56.1
Sample D Male 43.1
Septum
nTPM: 39.5
Samples: 4

Max nTPM: 43.2
Min nTPM: 36.2
Sample A Female 43.2
Sample B Female 38.3
Sample C Male 40.1
Sample D Male 36.2
Ventral pallidum
nTPM: 38.3
Samples: 4

Max nTPM: 40.9
Min nTPM: 37.0
Sample A Female 37.2
Sample B Female 40.9
Sample C Male 38.1
Sample D Male 37.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 41.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.1
Samples: 4

Max nTPM: 44.2
Min nTPM: 33.8
Sample A Male 44.2
Sample B Male 41.1
Sample C Female 33.8
Sample D Female 41.3
Septum
nTPM: 41.6
Samples: 4

Max nTPM: 44.6
Min nTPM: 37.8
Sample A Male 44.4
Sample B Male 44.6
Sample C Female 37.8
Sample D Female 39.7
Ventral forebrain
nTPM: 39.2
Samples: 4

Max nTPM: 44.5
Min nTPM: 34.7
Sample A Male 34.7
Sample B Male 39.2
Sample C Female 38.4
Sample D Female 44.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
583573 Antisense, RP_040831_02_G01, Mouse strain C57BL/6J (56 days, male) 2.5
Pallidum
Expression energy: 2.0
583573 Antisense, RP_040831_02_G01, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.