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DCAKD
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.0 nTPM
HPA:54.0 nTPM
GTEx:43.4 nTPM
FANTOM5:90.1 Scaled Tags Per Million
Pig:17.0 nTPM
Mouse:35.2 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 54.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 45.3
2481 Female, age 94, left hemisphere 51.9
2290 Female, age 72, unknown 47.9
1854 Male, age 80, left hemisphere 46.6
2289 Male, age 61, right hemisphere 46.4
1857 Female, age 85, left hemisphere 43.8
2288 Male, age 75, left hemisphere 43.1
1781 Male, age 74, unknown 42.0
2846 Female, age 79, unknown 40.4
Claustrum
nTPM: 41.2
2198 Male, age 80, both hemispheres 45.9
2491 Male, age 75, both hemispheres 42.3
2392 Female, age 94, both hemispheres 42.0
2284 Female, age 91, both hemispheres 41.5
2196 Female, age 79, unknown 40.9
2645 Female, age 72, unknown 40.8
1956 Male, age 74, unknown 39.9
2568 Male, age 61, both hemispheres 39.6
2292 Female, age 85, both hemispheres 37.8
Globus pallidus, externus
nTPM: 54.0
2646 Male, age 61, right hemisphere 61.2
1996 Male, age 80, right hemisphere 60.3
2772 Female, age 79, unknown 54.0
2395 Male, age 75, both hemispheres 48.9
2567 Female, age 72, unknown 45.6
Globus pallidus, internus
nTPM: 51.0
2483 Female, age 94, right hemisphere 64.2
2037 Male, age 80, right hemisphere 55.2
2287 Male, age 75, right hemisphere 51.9
1818 Male, age 74, unknown 50.7
2778 Female, age 91, both hemispheres 47.7
2566 Female, age 72, unknown 44.5
2111 Female, age 85, right hemisphere 42.9
Nucleus accumbens
nTPM: 44.3
2732 Male, age 80, right hemisphere 48.9
2286 Male, age 75, left hemisphere 45.2
1783 Male, age 74, unknown 44.9
1856 Female, age 91, right hemisphere 44.8
1806 Female, age 85, left hemisphere 44.1
2824 Male, age 61, right hemisphere 42.8
2698 Female, age 72, unknown 42.7
2391 Female, age 94, left hemisphere 40.7
Nucleus basalis of Meynert
nTPM: 47.2
2569 Male, age 61, both hemispheres 61.7
2484 Female, age 94, left hemisphere 44.9
2393 Male, age 80, right hemisphere 44.2
2821 Male, age 75, both hemispheres 37.8
Nucleus of the diagonal band
nTPM: 45.6
2775 Male, age 80, right hemisphere 48.4
1979 Male, age 74, unknown 48.1
1812 Female, age 91, both hemispheres 47.6
2195 Female, age 85, both hemispheres 43.2
2029 Male, age 61, right hemisphere 40.8
Olfactory tubercle
nTPM: 43.0
1846 Male, age 80, right hemisphere 47.5
1998 Female, age 91, both hemispheres 42.4
2487 Female, age 94, left hemisphere 42.2
2856 Male, age 75, right hemisphere 40.0
Putamen
nTPM: 44.5
2482 Female, age 94, left hemisphere 48.2
1829 Male, age 74, unknown 44.4
1838 Male, age 80, right hemisphere 44.4
2489 Female, age 72, unknown 44.1
2647 Male, age 75, left hemisphere 43.9
2466 Female, age 79, unknown 43.6
1937 Female, age 91, right hemisphere 42.7
Septal nuclei
nTPM: 45.3
2199 Male, age 80, right hemisphere 49.9
2059 Female, age 85, both hemispheres 48.0
1960 Male, age 74, unknown 45.4
2009 Female, age 91, both hemispheres 45.2
2394 Male, age 61, left hemisphere 44.5
2031 Female, age 72, unknown 44.3
2629 Female, age 94, right hemisphere 40.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.4
Samples: 246

Max nTPM: 95.2
Min nTPM: 18.0
Std nTPM: 10.7
Median nTPM: 41.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 95.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 86.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 72.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 69.5
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 69.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 67.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 67.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 65.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 65.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 64.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 63.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.5
Samples: 246

Max nTPM: 100.0
Min nTPM: 21.4
Std nTPM: 9.8
Median nTPM: 40.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 100.0
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 77.9
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 71.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 70.7
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 69.1
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 68.1
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 66.4
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 65.7
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 64.7
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 64.2
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 63.2
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Brain - Putamen (basal ganglia)
Average nTPM: 41.5
Samples: 205

Max nTPM: 97.4
Min nTPM: 19.2
Std nTPM: 12.2
Median nTPM: 39.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 97.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 93.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 90.4
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 85.8
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 70.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 68.8
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 68.6
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 68.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 67.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 67.1
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 65.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 87.7
FF:10164-103B2 76 years, female 87.7
Globus pallidus
Scaled Tags Per Million: 66.7
FF:10161-103A8 76 years, female 83.8
FF:10175-103C4 60 years, female 49.7
Nucleus accumbens
Scaled Tags Per Million: 90.1
FF:10037-101F1 23-56 years, mixed 90.1
Putamen
Scaled Tags Per Million: 80.1
FF:10176-103C5 60 years, female 80.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.0
Pig sample Sample description nTPM
Caudate
nTPM: 16.6
Samples: 4

Max nTPM: 22.9
Min nTPM: 14.1
Sample A Female 14.1
Sample B Female 14.7
Sample C Male 22.9
Sample D Male 14.8
Putamen
nTPM: 17.1
Samples: 4

Max nTPM: 20.5
Min nTPM: 10.9
Sample A Female 16.9
Sample B Female 10.9
Sample C Male 20.5
Sample D Male 19.9
Septum
nTPM: 15.1
Samples: 4

Max nTPM: 17.9
Min nTPM: 11.6
Sample A Female 14.1
Sample B Female 11.6
Sample C Male 16.8
Sample D Male 17.9
Ventral pallidum
nTPM: 14.9
Samples: 4

Max nTPM: 20.1
Min nTPM: 11.8
Sample A Female 11.8
Sample B Female 12.8
Sample C Male 20.1
Sample D Male 14.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 35.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 29.0
Samples: 4

Max nTPM: 32.0
Min nTPM: 25.7
Sample A Male 27.5
Sample B Male 32.0
Sample C Female 25.7
Sample D Female 30.9
Septum
nTPM: 31.0
Samples: 4

Max nTPM: 33.4
Min nTPM: 28.1
Sample A Male 33.4
Sample B Male 28.1
Sample C Female 31.7
Sample D Female 30.6
Ventral forebrain
nTPM: 35.2
Samples: 4

Max nTPM: 40.0
Min nTPM: 29.9
Sample A Male 31.3
Sample B Male 29.9
Sample C Female 40.0
Sample D Female 39.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
68861698 Antisense, RP_050224_02_G07, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.1
68861698 Antisense, RP_050224_02_G07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.