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RAPH1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:5.0 nTPM
HPA:5.0 nTPM
GTEx:2.2 nTPM
FANTOM5:23.1 Scaled Tags Per Million
Pig:37.8 nTPM
Mouse:15.7 nTPM
Allen mouse:3.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016744Antibody HPA020027
Glial cells Not detectedLow
Neuronal cells MediumLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 5.0
Sample id Sample description nTPM
Hippocampus
nTPM: 1.9
1898 Male, age 80, left hemisphere 5.3
1855 Male, age 76, left hemisphere 2.0
2621 Female, age 67, right hemisphere 2.0
2148 Female, age 91, left hemisphere 1.8
1911 Female, age 85, right hemisphere 0.2
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 2.3
2531 Female, age 67, both hemispheres 6.5
2010 Male, age 76, both hemispheres 3.7
1927 Female, age 91, both hemispheres 3.2
2246 Female, age 85, both hemispheres 0.8
2528 Male, age 74, both hemispheres 0.0
2530 Female, age 94, left hemisphere 0.0
Entorhinal gyrus
nTPM: 0.5
2764 Male, age 80, right hemisphere 1.5
1787 Male, age 76, left hemisphere 1.4
2686 Male, age 75, right hemisphere 0.2
1938 Female, age 85, left hemisphere 0.0
2117 Female, age 91, right hemisphere 0.0
2613 Female, age 94, left hemisphere 0.0
Hippocampus, CA1
nTPM: 5.0
2045 Male, age 76, both hemispheres 13.7
2749 Male, age 80, left hemisphere 7.2
1873 Female, age 85, both hemispheres 4.4
2082 Female, age 91, right hemisphere 0.0
2527 Male, age 74, both hemispheres 0.0
Hippocampus, CA2
nTPM: 0.8
1892 Male, age 76, both hemispheres 3.9
1963 Male, age 80, left hemisphere 1.1
1940 Female, age 85, left hemisphere 0.0
2113 Female, age 91, right hemisphere 0.0
2249 Male, age 74, both hemispheres 0.0
2437 Female, age 94, left hemisphere 0.0
Hippocampus, CA3
nTPM: 4.8
2620 Female, age 94, left hemisphere 10.1
1867 Male, age 76, both hemispheres 8.3
2137 Male, age 80, left hemisphere 6.6
2861 Female, age 67, both hemispheres 3.8
1891 Female, age 85, both hemispheres 0.2
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 1.4
2693 Female, age 94, both hemispheres 4.6
2018 Male, age 76, both hemispheres 3.6
2245 Female, age 91, both hemispheres 2.8
1850 Male, age 80, both hemispheres 2.4
2532 Female, age 72, left hemisphere 0.8
2622 Female, age 67, right hemisphere 0.2
2250 Female, age 67, right hemisphere 0.1
1933 Female, age 85, both hemispheres 0.0
1990 Female, age 91, right hemisphere 0.0
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 3.7
2521 Female, age 94, right hemisphere 6.7
1841 Female, age 85, right hemisphere 4.1
1794 Male, age 80, right hemisphere 3.9
2848 Male, age 76, right hemisphere 2.0
1847 Female, age 91, left hemisphere 1.6
Subiculum
nTPM: 0.2
1901 Male, age 80, both hemispheres 1.6
1977 Female, age 85, both hemispheres 0.0
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0
2619 Male, age 74, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 2.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 2.2
Samples: 197

Max nTPM: 6.5
Min nTPM: 0.3
Std nTPM: 1.1
Median nTPM: 2.0
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 6.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 6.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 5.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 5.4
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 4.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 4.5
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 4.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 4.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 4.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 4.3
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 4.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.1
FF:10153-102I9 76 years, female 24.2
FF:10169-103B7 60 years, female 21.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 37.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 31.9
Samples: 4

Max nTPM: 36.9
Min nTPM: 26.4
Sample A Female 36.9
Sample B Female 34.5
Sample C Male 26.4
Sample D Male 29.6
Entorhinal cortex
nTPM: 37.8
Samples: 4

Max nTPM: 40.4
Min nTPM: 33.4
Sample A Female 38.8
Sample B Female 33.4
Sample C Male 40.4
Sample D Male 38.5
Subiculum
nTPM: 26.9
Samples: 4

Max nTPM: 31.4
Min nTPM: 24.3
Sample A Female 31.4
Sample B Female 24.3
Sample C Male 24.7
Sample D Male 27.3
Ventral hippocampus
nTPM: 22.6
Samples: 4

Max nTPM: 27.7
Min nTPM: 19.8
Sample A Female 22.3
Sample B Female 19.8
Sample C Male 20.7
Sample D Male 27.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 15.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.7
Samples: 4

Max nTPM: 21.5
Min nTPM: 12.3
Sample A Male 13.5
Sample B Male 15.6
Sample C Female 12.3
Sample D Female 21.5
Hippocampal formation
nTPM: 10.1
Samples: 4

Max nTPM: 12.5
Min nTPM: 7.5
Sample A Male 9.1
Sample B Male 12.5
Sample C Female 11.4
Sample D Female 7.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.1
69446893 Antisense, RP_050419_01_H04, Mouse strain C57BL/6J (56 days, male) 3.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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