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SMARCC1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.8 nTPM
HPA:19.8 nTPM
GTEx:15.1 nTPM
FANTOM5:39.7 Scaled Tags Per Million
Pig:30.0 nTPM
Mouse:21.6 nTPM
Allen mouse:1.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.0
2666 Male, age 74, left hemisphere 20.1
2586 Male, age 75, left hemisphere 19.0
1830 Male, age 51, unknown 18.9
1833 Male, age 53, unknown 18.4
1870 Female, age 42, unknown 18.3
2411 Female, age 72, unknown 18.1
2828 Female, age 72, unknown 17.6
2019 Male, age 18, unknown 17.5
1827 Male, age 72, unknown 16.3
2219 Male, age 76, both hemispheres 15.8
Dorsal raphe nucleus
nTPM: 16.5
2016 Female, age 72, unknown 18.1
2750 Male, age 76, both hemispheres 17.2
1828 Male, age 53, unknown 16.4
2047 Male, age 72, unknown 16.0
2298 Female, age 72, unknown 14.9
Inferior colliculus
nTPM: 16.3
1890 Male, age 53, unknown 17.1
2849 Male, age 72, unknown 16.6
1848 Female, age 42, unknown 16.3
2097 Female, age 72, unknown 15.4
Median raphe nucleus
nTPM: 15.8
2220 Male, age 76, midline 15.8
Pedunculopontine tegmental nucleus
nTPM: 16.4
2334 Male, age 80, both hemispheres 17.1
2338 Male, age 61, both hemispheres 16.2
1921 Female, age 85, both hemispheres 15.8
Periaquaductal grey, anterior
nTPM: 16.4
2502 Female, age 75, unknown 17.0
1947 Male, age 18, unknown 16.7
1795 Male, age 51, unknown 15.6
Periaquaductal grey, dorsal
nTPM: 16.4
2464 Female, age 72, unknown 17.4
1831 Male, age 72, unknown 16.8
1840 Male, age 53, unknown 15.9
2850 Male, age 76, both hemispheres 15.4
Periaquaductal grey, lateral
nTPM: 15.7
2053 Male, age 18, unknown 16.8
2140 Male, age 76, both hemispheres 15.9
2272 Male, age 74, both hemispheres 14.5
Pretectal area
nTPM: 15.9
2316 Male, age 76, right hemisphere 17.8
2407 Male, age 75, both hemispheres 17.6
1815 Male, age 53, unknown 16.9
2825 Male, age 18, unknown 16.8
1817 Female, age 42, unknown 16.1
2007 Male, age 72, unknown 15.7
2224 Female, age 72, unknown 15.5
1816 Male, age 51, unknown 14.7
2273 Male, age 74, both hemispheres 14.7
1944 Female, age 72, unknown 14.4
2667 Female, age 75, unknown 14.4
Red nucleus
nTPM: 19.8
2588 Male, age 74, left hemisphere 21.5
1865 Male, age 51, unknown 21.0
1904 Male, age 53, unknown 20.8
2503 Female, age 72, unknown 20.4
2725 Female, age 75, unknown 19.8
2769 Male, age 72, unknown 19.8
1821 Female, age 72, unknown 19.5
1954 Female, age 42, unknown 19.5
2227 Male, age 72, unknown 19.3
2584 Male, age 75, left hemisphere 18.9
2785 Male, age 18, unknown 18.6
2823 Male, age 76, right hemisphere 18.5
Substantia nigra
nTPM: 17.2
2409 Female, age 72, unknown 18.4
2665 Male, age 74, both hemispheres 18.4
2590 Female, age 75, unknown 18.3
2583 Male, age 75, right hemisphere 18.1
2699 Male, age 18, unknown 17.3
2241 Male, age 72, unknown 17.1
1851 Male, age 51, unknown 17.0
1889 Female, age 72, unknown 16.3
1941 Male, age 53, unknown 15.6
1916 Female, age 42, unknown 15.2
Superior colliculus
nTPM: 17.3
1995 Male, age 72, unknown 19.3
1913 Female, age 42, unknown 18.6
2587 Male, age 74, left hemisphere 18.0
1839 Male, age 51, unknown 17.9
2664 Male, age 75, both hemispheres 17.9
2668 Female, age 75, unknown 17.3
1895 Male, age 76, right hemisphere 16.7
1796 Male, age 53, unknown 15.9
2261 Male, age 18, unknown 15.8
2087 Female, age 72, unknown 15.3
Ventral tegmental area
nTPM: 16.7
2410 Female, age 72, unknown 17.5
2021 Male, age 53, unknown 17.0
2223 Female, age 72, unknown 17.0
1915 Female, age 42, unknown 16.6
1942 Male, age 51, unknown 16.4
2218 Male, age 76, both hemispheres 15.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.1
Samples: 139

Max nTPM: 36.0
Min nTPM: 4.9
Std nTPM: 6.2
Median nTPM: 14.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 36.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 31.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 30.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 28.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 28.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 27.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 25.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 25.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 25.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 25.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.7
FF:10158-103A5 76 years, female 39.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.0
Pig sample Sample description nTPM
Midbrain
nTPM: 29.0
Samples: 4

Max nTPM: 41.9
Min nTPM: 20.0
Sample A Female 41.9
Sample B Female 33.1
Sample C Male 21.0
Sample D Male 20.0
Periaqueductal gray
nTPM: 27.3
Samples: 3

Max nTPM: 28.7
Min nTPM: 25.6
Sample B Female 28.7
Sample C Male 27.7
Sample D Male 25.6
Substantia nigra
nTPM: 30.0
Samples: 4

Max nTPM: 31.7
Min nTPM: 27.5
Sample A Female 31.7
Sample B Female 29.8
Sample C Male 27.5
Sample D Male 31.0
Superior colliculi
nTPM: 24.8
Samples: 4

Max nTPM: 26.7
Min nTPM: 21.9
Sample A Female 26.3
Sample B Female 21.9
Sample C Male 24.2
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.7
Samples: 4

Max nTPM: 23.5
Min nTPM: 20.0
Sample A Male 21.1
Sample B Male 20.0
Sample C Female 23.5
Sample D Female 22.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.7
69874174 Antisense, RP_050512_02_G08, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.