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SLC19A1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:11.8 nTPM
HPA:11.8 nTPM
GTEx:11.2 nTPM
FANTOM5:12.9 Scaled Tags Per Million
Pig:5.2 nTPM
Mouse:13.3 nTPM
Allen mouse:4.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA024802
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 11.8
Sample id Sample description nTPM
Hippocampus
nTPM: 4.0
2148 Female, age 91, left hemisphere 6.4
1911 Female, age 85, right hemisphere 4.7
2529 Female, age 94, left hemisphere 4.1
1855 Male, age 76, left hemisphere 3.3
2621 Female, age 67, right hemisphere 3.3
1898 Male, age 80, left hemisphere 1.9
Dentate gyrus
nTPM: 5.4
2531 Female, age 67, both hemispheres 6.1
2530 Female, age 94, left hemisphere 5.8
1927 Female, age 91, both hemispheres 5.4
2246 Female, age 85, both hemispheres 5.1
2010 Male, age 76, both hemispheres 4.9
2528 Male, age 74, both hemispheres 4.9
Entorhinal gyrus
nTPM: 4.2
2613 Female, age 94, left hemisphere 6.4
1787 Male, age 76, left hemisphere 5.9
2686 Male, age 75, right hemisphere 4.8
2764 Male, age 80, right hemisphere 4.1
1938 Female, age 85, left hemisphere 2.1
2117 Female, age 91, right hemisphere 1.8
Hippocampus, CA1
nTPM: 4.4
2045 Male, age 76, both hemispheres 6.5
2527 Male, age 74, both hemispheres 5.1
2082 Female, age 91, right hemisphere 4.7
1873 Female, age 85, both hemispheres 3.7
2749 Male, age 80, left hemisphere 2.2
Hippocampus, CA2
nTPM: 5.0
2249 Male, age 74, both hemispheres 6.6
2113 Female, age 91, right hemisphere 5.6
1963 Male, age 80, left hemisphere 4.9
1940 Female, age 85, left hemisphere 4.7
2437 Female, age 94, left hemisphere 4.6
1892 Male, age 76, both hemispheres 3.4
Hippocampus, CA3
nTPM: 11.8
2436 Male, age 74, both hemispheres 33.0
2620 Female, age 94, left hemisphere 21.0
2861 Female, age 67, both hemispheres 7.2
2137 Male, age 80, left hemisphere 4.3
1867 Male, age 76, both hemispheres 3.7
1891 Female, age 85, both hemispheres 1.9
Parahippocampal cortex
nTPM: 3.5
2622 Female, age 67, right hemisphere 6.5
2018 Male, age 76, both hemispheres 5.8
2692 Male, age 74, both hemispheres 4.8
1990 Female, age 91, right hemisphere 3.6
2250 Female, age 67, right hemisphere 3.4
2532 Female, age 72, left hemisphere 2.7
2693 Female, age 94, both hemispheres 2.6
2245 Female, age 91, both hemispheres 2.2
1850 Male, age 80, both hemispheres 2.1
1933 Female, age 85, both hemispheres 1.6
Perirhinal gyrus
nTPM: 2.4
1794 Male, age 80, right hemisphere 4.4
2521 Female, age 94, right hemisphere 3.2
2848 Male, age 76, right hemisphere 2.2
1841 Female, age 85, right hemisphere 1.7
1847 Female, age 91, left hemisphere 0.5
Subiculum
nTPM: 4.6
2438 Female, age 94, left hemisphere 9.4
2619 Male, age 74, both hemispheres 6.9
2729 Female, age 91, right hemisphere 5.7
2042 Male, age 76, both hemispheres 2.8
1901 Male, age 80, both hemispheres 1.8
1977 Female, age 85, both hemispheres 0.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.2
Samples: 197

Max nTPM: 34.4
Min nTPM: 1.8
Std nTPM: 4.9
Median nTPM: 10.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 34.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 29.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 26.7
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 25.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 25.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 24.8
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 23.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 22.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 21.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 21.6
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 21.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 12.9
FF:10153-102I9 76 years, female 17.6
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.5
Samples: 4

Max nTPM: 5.0
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 4.6
Sample C Male 4.4
Sample D Male 5.0
Entorhinal cortex
nTPM: 5.1
Samples: 4

Max nTPM: 5.5
Min nTPM: 4.5
Sample A Female 5.5
Sample B Female 4.5
Sample C Male 5.2
Sample D Male 5.3
Subiculum
nTPM: 5.2
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.4
Sample A Female 6.4
Sample B Female 4.9
Sample C Male 5.0
Sample D Male 4.4
Ventral hippocampus
nTPM: 4.7
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.4
Sample A Female 4.6
Sample B Female 5.4
Sample C Male 4.5
Sample D Male 4.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 13.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 13.3
Samples: 4

Max nTPM: 14.0
Min nTPM: 12.8
Sample A Male 12.9
Sample B Male 13.6
Sample C Female 12.8
Sample D Female 14.0
Hippocampal formation
nTPM: 12.3
Samples: 4

Max nTPM: 15.8
Min nTPM: 9.9
Sample A Male 11.3
Sample B Male 9.9
Sample C Female 12.0
Sample D Female 15.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.8
1283 Antisense, RP_040526_01_D07, Mouse strain C57BL/6J (56 days, male) 4.8
1282 Antisense, RP_040526_01_D07, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.