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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:404.1 nTPM
HPA:404.1 nTPM
GTEx:320.0 nTPM
FANTOM5:196.0 Scaled Tags Per Million
Pig:285.1 nTPM
Mouse:1008.0 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 404.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 394.8
2019 Male, age 18, unknown 405.1
1827 Male, age 72, unknown 404.9
1870 Female, age 42, unknown 397.2
2666 Male, age 74, left hemisphere 396.1
2219 Male, age 76, both hemispheres 394.1
1833 Male, age 53, unknown 393.2
2411 Female, age 72, unknown 392.5
2586 Male, age 75, left hemisphere 390.8
1830 Male, age 51, unknown 387.4
2828 Female, age 72, unknown 386.5
Dorsal raphe nucleus
nTPM: 396.2
1828 Male, age 53, unknown 405.2
2298 Female, age 72, unknown 402.2
2047 Male, age 72, unknown 394.1
2750 Male, age 76, both hemispheres 390.5
2016 Female, age 72, unknown 389.3
Inferior colliculus
nTPM: 402.7
2097 Female, age 72, unknown 411.3
1890 Male, age 53, unknown 407.4
1848 Female, age 42, unknown 400.9
2849 Male, age 72, unknown 391.2
Median raphe nucleus
nTPM: 395.1
2220 Male, age 76, midline 395.1
Pedunculopontine tegmental nucleus
nTPM: 404.0
2334 Male, age 80, both hemispheres 405.3
1921 Female, age 85, both hemispheres 405.2
2338 Male, age 61, both hemispheres 401.6
Periaquaductal grey, anterior
nTPM: 397.4
1947 Male, age 18, unknown 402.2
1795 Male, age 51, unknown 395.1
2502 Female, age 75, unknown 394.9
Periaquaductal grey, dorsal
nTPM: 389.2
1831 Male, age 72, unknown 392.3
1840 Male, age 53, unknown 390.5
2850 Male, age 76, both hemispheres 387.9
2464 Female, age 72, unknown 386.0
Periaquaductal grey, lateral
nTPM: 385.7
2053 Male, age 18, unknown 387.6
2272 Male, age 74, both hemispheres 384.8
2140 Male, age 76, both hemispheres 384.7
Pretectal area
nTPM: 404.1
1816 Male, age 51, unknown 424.9
1817 Female, age 42, unknown 422.0
2007 Male, age 72, unknown 420.1
1944 Female, age 72, unknown 417.2
1815 Male, age 53, unknown 405.1
2667 Female, age 75, unknown 403.4
2224 Female, age 72, unknown 397.1
2316 Male, age 76, right hemisphere 391.4
2407 Male, age 75, both hemispheres 389.3
2825 Male, age 18, unknown 389.2
2273 Male, age 74, both hemispheres 385.6
Red nucleus
nTPM: 400.2
1821 Female, age 72, unknown 427.6
2725 Female, age 75, unknown 406.4
2785 Male, age 18, unknown 405.2
2503 Female, age 72, unknown 400.5
1865 Male, age 51, unknown 400.2
1954 Female, age 42, unknown 399.0
2227 Male, age 72, unknown 398.1
2823 Male, age 76, right hemisphere 398.0
2769 Male, age 72, unknown 395.9
1904 Male, age 53, unknown 392.8
2588 Male, age 74, left hemisphere 390.6
2584 Male, age 75, left hemisphere 387.5
Substantia nigra
nTPM: 402.8
1889 Female, age 72, unknown 423.6
1916 Female, age 42, unknown 410.2
2665 Male, age 74, both hemispheres 409.2
1851 Male, age 51, unknown 406.3
2409 Female, age 72, unknown 405.9
1941 Male, age 53, unknown 402.3
2241 Male, age 72, unknown 399.9
2699 Male, age 18, unknown 394.3
2590 Female, age 75, unknown 393.1
2583 Male, age 75, right hemisphere 383.5
Superior colliculus
nTPM: 397.1
1895 Male, age 76, right hemisphere 409.7
2587 Male, age 74, left hemisphere 403.6
2087 Female, age 72, unknown 400.1
2668 Female, age 75, unknown 400.1
1796 Male, age 53, unknown 397.3
2664 Male, age 75, both hemispheres 395.1
2261 Male, age 18, unknown 394.7
1839 Male, age 51, unknown 392.5
1913 Female, age 42, unknown 389.4
1995 Male, age 72, unknown 389.0
Ventral tegmental area
nTPM: 396.3
1915 Female, age 42, unknown 405.7
2410 Female, age 72, unknown 403.5
2218 Male, age 76, both hemispheres 401.1
2223 Female, age 72, unknown 391.7
1942 Male, age 51, unknown 389.8
2021 Male, age 53, unknown 386.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 320.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 320.0
Samples: 139

Max nTPM: 699.7
Min nTPM: 144.3
Std nTPM: 106.4
Median nTPM: 298.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 699.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 626.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 586.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 571.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 569.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 537.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 533.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 525.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 514.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 514.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 504.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 196.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 196.0
FF:10158-103A5 76 years, female 196.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 285.1
Pig sample Sample description nTPM
Midbrain
nTPM: 247.3
Samples: 4

Max nTPM: 280.5
Min nTPM: 226.9
Sample A Female 248.3
Sample B Female 233.3
Sample C Male 280.5
Sample D Male 226.9
Periaqueductal gray
nTPM: 189.6
Samples: 3

Max nTPM: 209.5
Min nTPM: 158.0
Sample B Female 201.4
Sample C Male 209.5
Sample D Male 158.0
Substantia nigra
nTPM: 233.7
Samples: 4

Max nTPM: 369.1
Min nTPM: 156.1
Sample A Female 369.1
Sample B Female 186.9
Sample C Male 222.6
Sample D Male 156.1
Superior colliculi
nTPM: 285.1
Samples: 4

Max nTPM: 367.5
Min nTPM: 195.5
Sample A Female 367.5
Sample B Female 195.5
Sample C Male 348.8
Sample D Male 228.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1008.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 1008.1
Samples: 4

Max nTPM: 1064.6
Min nTPM: 983.2
Sample A Male 1064.6
Sample B Male 986.6
Sample C Female 983.2
Sample D Female 997.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
77340502 Antisense, RP_070116_02_D11, Mouse strain C57BL/6J (56 days, male) 3.8
71763912 Antisense, RP_050921_02_H02, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.