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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:23.5 nTPM
HPA:23.5 nTPM
GTEx:18.6 nTPM
FANTOM5:18.9 Scaled Tags Per Million
Pig:16.3 nTPM
Mouse:10.5 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA042128Antibody HPA049883Antibody HPA051156Antibody CAB004298
Glial cells Not detectedNot detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detectedNot detected









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.5
Sample id Sample description nTPM
Hippocampus
nTPM: 22.5
2529 Female, age 94, left hemisphere 24.3
1911 Female, age 85, right hemisphere 22.7
2621 Female, age 67, right hemisphere 22.4
2148 Female, age 91, left hemisphere 22.2
1898 Male, age 80, left hemisphere 21.8
1855 Male, age 76, left hemisphere 21.6
Dentate gyrus
nTPM: 21.6
2528 Male, age 74, both hemispheres 22.6
2010 Male, age 76, both hemispheres 22.2
2530 Female, age 94, left hemisphere 21.8
2531 Female, age 67, both hemispheres 21.6
1927 Female, age 91, both hemispheres 21.2
2246 Female, age 85, both hemispheres 20.5
Entorhinal gyrus
nTPM: 23.4
2117 Female, age 91, right hemisphere 24.8
2764 Male, age 80, right hemisphere 24.1
1787 Male, age 76, left hemisphere 24.0
2686 Male, age 75, right hemisphere 23.4
1938 Female, age 85, left hemisphere 23.0
2613 Female, age 94, left hemisphere 21.3
Hippocampus, CA1
nTPM: 22.3
2045 Male, age 76, both hemispheres 23.4
2082 Female, age 91, right hemisphere 23.0
2527 Male, age 74, both hemispheres 22.1
1873 Female, age 85, both hemispheres 21.6
2749 Male, age 80, left hemisphere 21.3
Hippocampus, CA2
nTPM: 22.9
1940 Female, age 85, left hemisphere 25.4
2113 Female, age 91, right hemisphere 23.2
2437 Female, age 94, left hemisphere 23.2
2249 Male, age 74, both hemispheres 22.3
1892 Male, age 76, both hemispheres 21.8
1963 Male, age 80, left hemisphere 21.6
Hippocampus, CA3
nTPM: 23.2
1867 Male, age 76, both hemispheres 24.8
2137 Male, age 80, left hemisphere 24.1
1891 Female, age 85, both hemispheres 23.4
2861 Female, age 67, both hemispheres 22.5
2620 Female, age 94, left hemisphere 22.3
2436 Male, age 74, both hemispheres 22.0
Parahippocampal cortex
nTPM: 23.1
1990 Female, age 91, right hemisphere 24.0
2018 Male, age 76, both hemispheres 23.7
2693 Female, age 94, both hemispheres 23.5
2692 Male, age 74, both hemispheres 23.4
1850 Male, age 80, both hemispheres 23.2
2622 Female, age 67, right hemisphere 22.8
1933 Female, age 85, both hemispheres 22.7
2245 Female, age 91, both hemispheres 22.7
2532 Female, age 72, left hemisphere 22.7
2250 Female, age 67, right hemisphere 22.2
Perirhinal gyrus
nTPM: 23.5
1794 Male, age 80, right hemisphere 24.2
2848 Male, age 76, right hemisphere 24.2
1841 Female, age 85, right hemisphere 24.1
1847 Female, age 91, left hemisphere 23.3
2521 Female, age 94, right hemisphere 21.6
Subiculum
nTPM: 23.2
2042 Male, age 76, both hemispheres 25.2
1901 Male, age 80, both hemispheres 24.0
2619 Male, age 74, both hemispheres 23.9
1977 Female, age 85, both hemispheres 22.7
2729 Female, age 91, right hemisphere 22.7
2438 Female, age 94, left hemisphere 20.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.6
Samples: 197

Max nTPM: 28.8
Min nTPM: 11.6
Std nTPM: 3.1
Median nTPM: 18.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 28.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 28.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 26.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 26.2
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 25.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 25.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 25.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 24.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 24.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 24.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 24.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 18.9
FF:10153-102I9 76 years, female 24.2
FF:10169-103B7 60 years, female 13.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.3
Samples: 4

Max nTPM: 16.2
Min nTPM: 9.8
Sample A Female 14.7
Sample B Female 12.6
Sample C Male 16.2
Sample D Male 9.8
Entorhinal cortex
nTPM: 14.7
Samples: 4

Max nTPM: 16.6
Min nTPM: 12.4
Sample A Female 15.5
Sample B Female 14.4
Sample C Male 16.6
Sample D Male 12.4
Subiculum
nTPM: 16.3
Samples: 4

Max nTPM: 19.3
Min nTPM: 13.9
Sample A Female 19.3
Sample B Female 15.8
Sample C Male 16.3
Sample D Male 13.9
Ventral hippocampus
nTPM: 14.8
Samples: 4

Max nTPM: 19.9
Min nTPM: 12.2
Sample A Female 14.0
Sample B Female 12.2
Sample C Male 19.9
Sample D Male 12.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 10.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.6
Samples: 4

Max nTPM: 11.1
Min nTPM: 9.5
Sample A Male 11.1
Sample B Male 11.1
Sample C Female 9.5
Sample D Female 10.5
Hippocampal formation
nTPM: 6.9
Samples: 4

Max nTPM: 7.9
Min nTPM: 6.3
Sample A Male 6.9
Sample B Male 6.3
Sample C Female 6.5
Sample D Female 7.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
68632679 Antisense, RP_050125_02_A06, Mouse strain C57BL/6J (56 days, male) 0.4
71016584 Antisense, RP_050725_03_A03, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.