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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:30.2 nTPM
HPA:30.2 nTPM
GTEx:28.6 nTPM
FANTOM5:28.7 Scaled Tags Per Million
Pig:18.3 nTPM
Mouse:20.2 nTPM
Allen mouse:4.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA020068
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Hippocampus
nTPM: 29.0
1911 Female, age 85, right hemisphere 30.5
2621 Female, age 67, right hemisphere 29.7
1855 Male, age 76, left hemisphere 29.3
2529 Female, age 94, left hemisphere 29.0
1898 Male, age 80, left hemisphere 28.4
2148 Female, age 91, left hemisphere 27.1
Dentate gyrus
nTPM: 30.2
2530 Female, age 94, left hemisphere 36.8
2010 Male, age 76, both hemispheres 32.2
2531 Female, age 67, both hemispheres 30.1
1927 Female, age 91, both hemispheres 28.6
2246 Female, age 85, both hemispheres 28.0
2528 Male, age 74, both hemispheres 25.6
Entorhinal gyrus
nTPM: 27.3
2686 Male, age 75, right hemisphere 31.1
1938 Female, age 85, left hemisphere 27.4
2117 Female, age 91, right hemisphere 27.3
2613 Female, age 94, left hemisphere 26.4
1787 Male, age 76, left hemisphere 26.1
2764 Male, age 80, right hemisphere 25.6
Hippocampus, CA1
nTPM: 27.6
2045 Male, age 76, both hemispheres 30.5
1873 Female, age 85, both hemispheres 28.8
2749 Male, age 80, left hemisphere 27.5
2527 Male, age 74, both hemispheres 26.9
2082 Female, age 91, right hemisphere 24.4
Hippocampus, CA2
nTPM: 28.1
1963 Male, age 80, left hemisphere 30.7
2437 Female, age 94, left hemisphere 30.6
1892 Male, age 76, both hemispheres 28.8
1940 Female, age 85, left hemisphere 26.9
2249 Male, age 74, both hemispheres 26.3
2113 Female, age 91, right hemisphere 25.4
Hippocampus, CA3
nTPM: 27.7
2861 Female, age 67, both hemispheres 32.3
1891 Female, age 85, both hemispheres 30.1
1867 Male, age 76, both hemispheres 28.0
2436 Male, age 74, both hemispheres 25.9
2137 Male, age 80, left hemisphere 25.5
2620 Female, age 94, left hemisphere 24.1
Parahippocampal cortex
nTPM: 26.5
2018 Male, age 76, both hemispheres 28.0
2532 Female, age 72, left hemisphere 27.7
2622 Female, age 67, right hemisphere 27.2
2692 Male, age 74, both hemispheres 26.9
1933 Female, age 85, both hemispheres 26.6
1850 Male, age 80, both hemispheres 26.4
1990 Female, age 91, right hemisphere 26.3
2245 Female, age 91, both hemispheres 26.3
2693 Female, age 94, both hemispheres 25.4
2250 Female, age 67, right hemisphere 24.3
Perirhinal gyrus
nTPM: 25.1
1841 Female, age 85, right hemisphere 27.2
2848 Male, age 76, right hemisphere 27.1
1794 Male, age 80, right hemisphere 24.7
1847 Female, age 91, left hemisphere 24.0
2521 Female, age 94, right hemisphere 22.8
Subiculum
nTPM: 28.4
2438 Female, age 94, left hemisphere 32.9
2042 Male, age 76, both hemispheres 30.2
1901 Male, age 80, both hemispheres 28.0
1977 Female, age 85, both hemispheres 26.8
2619 Male, age 74, both hemispheres 26.7
2729 Female, age 91, right hemisphere 25.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 28.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.6
Samples: 197

Max nTPM: 101.1
Min nTPM: 5.2
Std nTPM: 13.6
Median nTPM: 24.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 101.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 66.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 64.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 60.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 60.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 59.4
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 58.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 56.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 56.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 56.1
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 55.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 28.7
FF:10153-102I9 76 years, female 30.2
FF:10169-103B7 60 years, female 27.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 18.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 12.2
Samples: 4

Max nTPM: 18.1
Min nTPM: 7.8
Sample A Female 10.8
Sample B Female 12.2
Sample C Male 18.1
Sample D Male 7.8
Entorhinal cortex
nTPM: 17.5
Samples: 4

Max nTPM: 23.0
Min nTPM: 9.4
Sample A Female 19.7
Sample B Female 17.9
Sample C Male 23.0
Sample D Male 9.4
Subiculum
nTPM: 18.3
Samples: 4

Max nTPM: 22.9
Min nTPM: 12.1
Sample A Female 20.1
Sample B Female 12.1
Sample C Male 18.2
Sample D Male 22.9
Ventral hippocampus
nTPM: 15.1
Samples: 4

Max nTPM: 25.1
Min nTPM: 10.6
Sample A Female 11.3
Sample B Female 10.6
Sample C Male 25.1
Sample D Male 13.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 20.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 19.9
Samples: 4

Max nTPM: 20.8
Min nTPM: 18.7
Sample A Male 20.8
Sample B Male 19.3
Sample C Female 20.8
Sample D Female 18.7
Hippocampal formation
nTPM: 20.2
Samples: 4

Max nTPM: 26.1
Min nTPM: 17.3
Sample A Male 17.3
Sample B Male 19.2
Sample C Female 26.1
Sample D Female 18.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.8
70539162 Antisense, RP_050324_01_F06, Mouse strain C57BL/6J (56 days, male) 6.9
74581396 Antisense, RP_060117_02_C05, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.