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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.2 nTPM
HPA:37.2 nTPM
GTEx:34.4 nTPM
FANTOM5:49.6 Scaled Tags Per Million
Pig:68.8 nTPM
Mouse:10.5 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.1
2019 Male, age 18, unknown 42.1
2666 Male, age 74, left hemisphere 40.1
2828 Female, age 72, unknown 34.9
1830 Male, age 51, unknown 33.6
1870 Female, age 42, unknown 32.5
1827 Male, age 72, unknown 32.2
2219 Male, age 76, both hemispheres 31.9
1833 Male, age 53, unknown 31.6
2411 Female, age 72, unknown 31.5
2586 Male, age 75, left hemisphere 31.1
Dorsal raphe nucleus
nTPM: 31.8
2016 Female, age 72, unknown 34.3
1828 Male, age 53, unknown 32.4
2047 Male, age 72, unknown 31.4
2298 Female, age 72, unknown 30.6
2750 Male, age 76, both hemispheres 30.5
Inferior colliculus
nTPM: 32.5
2097 Female, age 72, unknown 33.3
1890 Male, age 53, unknown 33.0
1848 Female, age 42, unknown 32.1
2849 Male, age 72, unknown 31.4
Median raphe nucleus
nTPM: 31.6
2220 Male, age 76, midline 31.6
Pedunculopontine tegmental nucleus
nTPM: 34.6
2334 Male, age 80, both hemispheres 39.1
2338 Male, age 61, both hemispheres 32.6
1921 Female, age 85, both hemispheres 32.1
Periaquaductal grey, anterior
nTPM: 33.0
2502 Female, age 75, unknown 38.0
1947 Male, age 18, unknown 30.8
1795 Male, age 51, unknown 30.2
Periaquaductal grey, dorsal
nTPM: 35.8
2850 Male, age 76, both hemispheres 48.0
2464 Female, age 72, unknown 32.7
1840 Male, age 53, unknown 31.6
1831 Male, age 72, unknown 30.8
Periaquaductal grey, lateral
nTPM: 33.4
2140 Male, age 76, both hemispheres 40.7
2053 Male, age 18, unknown 31.8
2272 Male, age 74, both hemispheres 27.8
Pretectal area
nTPM: 33.3
2007 Male, age 72, unknown 39.3
1815 Male, age 53, unknown 38.8
1817 Female, age 42, unknown 38.4
1816 Male, age 51, unknown 35.4
1944 Female, age 72, unknown 33.9
2316 Male, age 76, right hemisphere 33.9
2273 Male, age 74, both hemispheres 30.9
2407 Male, age 75, both hemispheres 30.5
2825 Male, age 18, unknown 28.7
2667 Female, age 75, unknown 28.6
2224 Female, age 72, unknown 28.4
Red nucleus
nTPM: 37.2
2785 Male, age 18, unknown 41.1
1954 Female, age 42, unknown 40.7
2588 Male, age 74, left hemisphere 39.9
1904 Male, age 53, unknown 38.9
2503 Female, age 72, unknown 38.8
2227 Male, age 72, unknown 37.5
1821 Female, age 72, unknown 37.0
1865 Male, age 51, unknown 37.0
2769 Male, age 72, unknown 37.0
2725 Female, age 75, unknown 36.2
2823 Male, age 76, right hemisphere 31.1
2584 Male, age 75, left hemisphere 30.9
Substantia nigra
nTPM: 32.6
2665 Male, age 74, both hemispheres 43.2
1889 Female, age 72, unknown 34.7
2590 Female, age 75, unknown 33.9
2241 Male, age 72, unknown 32.4
1851 Male, age 51, unknown 31.5
1941 Male, age 53, unknown 31.1
2409 Female, age 72, unknown 31.1
2583 Male, age 75, right hemisphere 29.7
2699 Male, age 18, unknown 29.5
1916 Female, age 42, unknown 29.0
Superior colliculus
nTPM: 32.6
2587 Male, age 74, left hemisphere 36.5
2087 Female, age 72, unknown 33.7
2261 Male, age 18, unknown 33.7
1995 Male, age 72, unknown 33.6
1913 Female, age 42, unknown 32.1
1839 Male, age 51, unknown 32.0
2668 Female, age 75, unknown 31.7
2664 Male, age 75, both hemispheres 31.6
1895 Male, age 76, right hemisphere 30.7
1796 Male, age 53, unknown 30.1
Ventral tegmental area
nTPM: 31.6
1942 Male, age 51, unknown 33.2
2021 Male, age 53, unknown 32.9
2218 Male, age 76, both hemispheres 32.7
2223 Female, age 72, unknown 31.4
2410 Female, age 72, unknown 30.5
1915 Female, age 42, unknown 28.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.4
Samples: 139

Max nTPM: 87.3
Min nTPM: 9.2
Std nTPM: 14.6
Median nTPM: 31.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 87.3
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 76.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 68.6
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 68.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 68.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 67.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 63.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 60.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 59.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 59.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 58.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.6
FF:10158-103A5 76 years, female 49.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.8
Pig sample Sample description nTPM
Midbrain
nTPM: 22.0
Samples: 4

Max nTPM: 27.7
Min nTPM: 16.8
Sample A Female 26.3
Sample B Female 17.0
Sample C Male 27.7
Sample D Male 16.8
Periaqueductal gray
nTPM: 12.3
Samples: 3

Max nTPM: 13.5
Min nTPM: 10.8
Sample B Female 12.6
Sample C Male 13.5
Sample D Male 10.8
Substantia nigra
nTPM: 31.5
Samples: 4

Max nTPM: 56.0
Min nTPM: 21.0
Sample A Female 24.0
Sample B Female 56.0
Sample C Male 21.0
Sample D Male 25.1
Superior colliculi
nTPM: 68.8
Samples: 4

Max nTPM: 165.4
Min nTPM: 28.0
Sample A Female 49.5
Sample B Female 165.4
Sample C Male 32.2
Sample D Male 28.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.5
Samples: 4

Max nTPM: 12.0
Min nTPM: 9.4
Sample A Male 9.4
Sample B Male 10.6
Sample C Female 12.0
Sample D Female 10.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70539162 Antisense, RP_050324_01_F06, Mouse strain C57BL/6J (56 days, male) 2.1
74581396 Antisense, RP_060117_02_C05, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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