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CBX2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:0.9 nTPM
HPA:0.9 nTPM
GTEx:0.5 nTPM
FANTOM5:1.7 Scaled Tags Per Million
Pig:2.0 nTPM
Mouse:1.5 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA023083
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.8
1781 Male, age 74, unknown 0.9
1857 Female, age 85, left hemisphere 0.9
2846 Female, age 79, unknown 0.9
2290 Female, age 72, unknown 0.8
2481 Female, age 94, left hemisphere 0.8
1854 Male, age 80, left hemisphere 0.7
2288 Male, age 75, left hemisphere 0.7
2289 Male, age 61, right hemisphere 0.7
Claustrum
nTPM: 0.7
1956 Male, age 74, unknown 0.8
2292 Female, age 85, both hemispheres 0.8
2392 Female, age 94, both hemispheres 0.8
2196 Female, age 79, unknown 0.7
2198 Male, age 80, both hemispheres 0.7
2284 Female, age 91, both hemispheres 0.7
2491 Male, age 75, both hemispheres 0.7
2568 Male, age 61, both hemispheres 0.7
2645 Female, age 72, unknown 0.7
Globus pallidus, externus
nTPM: 0.8
2567 Female, age 72, unknown 0.9
1996 Male, age 80, right hemisphere 0.8
2646 Male, age 61, right hemisphere 0.8
2395 Male, age 75, both hemispheres 0.6
2772 Female, age 79, unknown 0.6
Globus pallidus, internus
nTPM: 0.8
2037 Male, age 80, right hemisphere 1.0
2778 Female, age 91, both hemispheres 1.0
2111 Female, age 85, right hemisphere 0.9
2566 Female, age 72, unknown 0.9
1818 Male, age 74, unknown 0.8
2287 Male, age 75, right hemisphere 0.7
2483 Female, age 94, right hemisphere 0.7
Nucleus accumbens
nTPM: 0.7
1783 Male, age 74, unknown 0.9
2698 Female, age 72, unknown 0.8
2824 Male, age 61, right hemisphere 0.8
1806 Female, age 85, left hemisphere 0.7
2286 Male, age 75, left hemisphere 0.7
2732 Male, age 80, right hemisphere 0.7
1856 Female, age 91, right hemisphere 0.6
2391 Female, age 94, left hemisphere 0.5
Nucleus basalis of Meynert
nTPM: 0.9
2484 Female, age 94, left hemisphere 1.0
2569 Male, age 61, both hemispheres 1.0
2393 Male, age 80, right hemisphere 0.9
2821 Male, age 75, both hemispheres 0.7
Nucleus of the diagonal band
nTPM: 0.5
1979 Male, age 74, unknown 0.6
2029 Male, age 61, right hemisphere 0.6
2775 Male, age 80, right hemisphere 0.6
2195 Female, age 85, both hemispheres 0.5
1812 Female, age 91, both hemispheres 0.4
Olfactory tubercle
nTPM: 0.6
1998 Female, age 91, both hemispheres 0.6
2856 Male, age 75, right hemisphere 0.6
1846 Male, age 80, right hemisphere 0.5
2487 Female, age 94, left hemisphere 0.5
Putamen
nTPM: 0.9
2466 Female, age 79, unknown 1.1
2489 Female, age 72, unknown 1.0
2647 Male, age 75, left hemisphere 1.0
1838 Male, age 80, right hemisphere 0.9
2482 Female, age 94, left hemisphere 0.9
1829 Male, age 74, unknown 0.8
1937 Female, age 91, right hemisphere 0.7
Septal nuclei
nTPM: 0.6
2394 Male, age 61, left hemisphere 0.8
2199 Male, age 80, right hemisphere 0.7
1960 Male, age 74, unknown 0.6
2059 Female, age 85, both hemispheres 0.6
2031 Female, age 72, unknown 0.5
2009 Female, age 91, both hemispheres 0.4
2629 Female, age 94, right hemisphere 0.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.4
Samples: 246

Max nTPM: 1.2
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 0.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 0.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 0.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 0.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 0.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 0.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 0.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.4
Samples: 246

Max nTPM: 2.1
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 2.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 1.5
GTEX-15G19-0011-R6b-SM-7KUM3 60-69 years, male 1.1
GTEX-NL4W-0011-R6a-SM-2I3GA 50-59 years, male 1.1
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 1.1
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 1.0
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 1.0
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 0.9
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 0.8
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 0.8
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 0.8
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Brain - Putamen (basal ganglia)
Average nTPM: 0.5
Samples: 205

Max nTPM: 1.9
Min nTPM: 0.1
Std nTPM: 0.2
Median nTPM: 0.5
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 1.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 1.9
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 1.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 1.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 1.1
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 1.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 1.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 0.9
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 0.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 0.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 0.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.2
FF:10164-103B2 76 years, female 1.2
Globus pallidus
Scaled Tags Per Million: 1.7
FF:10161-103A8 76 years, female 1.9
FF:10175-103C4 60 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 0.7
FF:10037-101F1 23-56 years, mixed 0.7
Putamen
Scaled Tags Per Million: 0.8
FF:10176-103C5 60 years, female 0.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.0
Pig sample Sample description nTPM
Caudate
nTPM: 2.0
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 2.1
Sample C Male 1.8
Sample D Male 2.1
Putamen
nTPM: 1.5
Samples: 4

Max nTPM: 2.0
Min nTPM: 1.0
Sample A Female 1.5
Sample B Female 2.0
Sample C Male 1.0
Sample D Male 1.6
Septum
nTPM: 1.3
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.7
Sample A Female 1.6
Sample B Female 1.8
Sample C Male 0.7
Sample D Male 1.2
Ventral pallidum
nTPM: 1.3
Samples: 4

Max nTPM: 1.7
Min nTPM: 0.8
Sample A Female 1.7
Sample B Female 1.4
Sample C Male 0.8
Sample D Male 1.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 1.5
Samples: 4

Max nTPM: 1.9
Min nTPM: 1.2
Sample A Male 1.2
Sample B Male 1.4
Sample C Female 1.9
Sample D Female 1.5
Septum
nTPM: 0.9
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.6
Sample A Male 1.0
Sample B Male 0.6
Sample C Female 0.9
Sample D Female 1.2
Ventral forebrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.9
Sample A Male 1.0
Sample B Male 0.9
Sample C Female 1.1
Sample D Female 1.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
67814209 Antisense, RP_040920_01_F10, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
67814209 Antisense, RP_040920_01_F10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.