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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:501.9 nTPM
HPA:501.9 nTPM
GTEx:545.9 nTPM
FANTOM5:193.7 Scaled Tags Per Million
Pig:160.2 nTPM
Mouse:1407.7 nTPM
Allen mouse:7.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 501.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 485.7
2019 Male, age 18, unknown 498.7
2411 Female, age 72, unknown 497.4
1827 Male, age 72, unknown 494.7
1870 Female, age 42, unknown 491.1
1833 Male, age 53, unknown 483.2
2666 Male, age 74, left hemisphere 481.2
2219 Male, age 76, both hemispheres 479.8
1830 Male, age 51, unknown 478.9
2828 Female, age 72, unknown 477.2
2586 Male, age 75, left hemisphere 475.2
Dorsal raphe nucleus
nTPM: 492.5
2298 Female, age 72, unknown 507.6
1828 Male, age 53, unknown 494.6
2047 Male, age 72, unknown 491.4
2750 Male, age 76, both hemispheres 490.1
2016 Female, age 72, unknown 478.6
Inferior colliculus
nTPM: 497.3
2097 Female, age 72, unknown 512.8
1890 Male, age 53, unknown 502.8
1848 Female, age 42, unknown 490.6
2849 Male, age 72, unknown 483.0
Median raphe nucleus
nTPM: 489.2
2220 Male, age 76, midline 489.2
Pedunculopontine tegmental nucleus
nTPM: 501.9
1921 Female, age 85, both hemispheres 510.7
2334 Male, age 80, both hemispheres 500.6
2338 Male, age 61, both hemispheres 494.5
Periaquaductal grey, anterior
nTPM: 491.2
1947 Male, age 18, unknown 501.1
1795 Male, age 51, unknown 491.4
2502 Female, age 75, unknown 481.2
Periaquaductal grey, dorsal
nTPM: 482.9
2850 Male, age 76, both hemispheres 485.8
2464 Female, age 72, unknown 483.5
1831 Male, age 72, unknown 483.1
1840 Male, age 53, unknown 479.2
Periaquaductal grey, lateral
nTPM: 483.2
2272 Male, age 74, both hemispheres 495.0
2053 Male, age 18, unknown 481.6
2140 Male, age 76, both hemispheres 473.0
Pretectal area
nTPM: 500.4
1816 Male, age 51, unknown 524.0
2007 Male, age 72, unknown 518.8
1817 Female, age 42, unknown 517.2
1944 Female, age 72, unknown 510.9
1815 Male, age 53, unknown 505.3
2224 Female, age 72, unknown 501.9
2667 Female, age 75, unknown 501.7
2273 Male, age 74, both hemispheres 489.5
2316 Male, age 76, right hemisphere 480.6
2825 Male, age 18, unknown 480.5
2407 Male, age 75, both hemispheres 473.7
Red nucleus
nTPM: 493.2
1821 Female, age 72, unknown 514.4
2725 Female, age 75, unknown 512.9
2785 Male, age 18, unknown 496.8
2584 Male, age 75, left hemisphere 494.5
1865 Male, age 51, unknown 489.6
2503 Female, age 72, unknown 489.6
2823 Male, age 76, right hemisphere 489.5
1954 Female, age 42, unknown 489.2
2769 Male, age 72, unknown 486.6
2227 Male, age 72, unknown 485.5
2588 Male, age 74, left hemisphere 485.3
1904 Male, age 53, unknown 484.2
Substantia nigra
nTPM: 497.0
1889 Female, age 72, unknown 523.9
2241 Male, age 72, unknown 508.7
1916 Female, age 42, unknown 505.0
1851 Male, age 51, unknown 504.2
1941 Male, age 53, unknown 503.4
2665 Male, age 74, both hemispheres 489.7
2409 Female, age 72, unknown 488.1
2590 Female, age 75, unknown 484.5
2699 Male, age 18, unknown 484.0
2583 Male, age 75, right hemisphere 478.1
Superior colliculus
nTPM: 488.7
1796 Male, age 53, unknown 497.7
2087 Female, age 72, unknown 496.3
2261 Male, age 18, unknown 492.5
1895 Male, age 76, right hemisphere 491.2
2587 Male, age 74, left hemisphere 491.2
2668 Female, age 75, unknown 489.9
1913 Female, age 42, unknown 489.1
1839 Male, age 51, unknown 481.4
1995 Male, age 72, unknown 479.6
2664 Male, age 75, both hemispheres 478.1
Ventral tegmental area
nTPM: 493.7
2410 Female, age 72, unknown 510.2
2223 Female, age 72, unknown 499.0
1915 Female, age 42, unknown 497.6
2218 Male, age 76, both hemispheres 492.8
1942 Male, age 51, unknown 483.6
2021 Male, age 53, unknown 479.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 545.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 545.9
Samples: 139

Max nTPM: 1287.4
Min nTPM: 284.4
Std nTPM: 148.2
Median nTPM: 519.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1287.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1172.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 897.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 871.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 868.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 826.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 815.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 811.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 784.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 757.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 753.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 193.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 193.7
FF:10158-103A5 76 years, female 193.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 160.2
Pig sample Sample description nTPM
Midbrain
nTPM: 136.0
Samples: 4

Max nTPM: 149.9
Min nTPM: 122.3
Sample A Female 122.3
Sample B Female 130.0
Sample C Male 141.7
Sample D Male 149.9
Periaqueductal gray
nTPM: 100.9
Samples: 3

Max nTPM: 114.7
Min nTPM: 87.6
Sample B Female 100.3
Sample C Male 114.7
Sample D Male 87.6
Substantia nigra
nTPM: 132.7
Samples: 4

Max nTPM: 206.6
Min nTPM: 81.4
Sample A Female 206.6
Sample B Female 123.9
Sample C Male 118.9
Sample D Male 81.4
Superior colliculi
nTPM: 160.2
Samples: 4

Max nTPM: 226.2
Min nTPM: 120.2
Sample A Female 226.2
Sample B Female 125.1
Sample C Male 169.2
Sample D Male 120.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1407.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 1407.7
Samples: 4

Max nTPM: 1522.0
Min nTPM: 1292.9
Sample A Male 1493.6
Sample B Male 1322.2
Sample C Female 1292.9
Sample D Female 1522.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.3
67862431 Antisense, RP_041018_01_C03, Mouse strain C57BL/6J (56 days, male) 7.3
68203444 Antisense, RP_041018_01_C03, Mouse strain C57BL/6J (56 days, male) 5.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.