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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.3 nTPM
HPA:70.3 nTPM
GTEx:69.5 nTPM
FANTOM5:104.5 Scaled Tags Per Million
Pig:58.4 nTPM
Mouse:58.1 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 66.4
2586 Male, age 75, left hemisphere 82.5
2828 Female, age 72, unknown 70.7
1827 Male, age 72, unknown 69.3
2411 Female, age 72, unknown 69.1
1870 Female, age 42, unknown 68.9
2219 Male, age 76, both hemispheres 63.4
1833 Male, age 53, unknown 61.3
2666 Male, age 74, left hemisphere 59.8
1830 Male, age 51, unknown 59.5
2019 Male, age 18, unknown 59.3
Dorsal raphe nucleus
nTPM: 68.1
2298 Female, age 72, unknown 73.7
2016 Female, age 72, unknown 68.7
2047 Male, age 72, unknown 67.7
1828 Male, age 53, unknown 66.5
2750 Male, age 76, both hemispheres 64.1
Inferior colliculus
nTPM: 63.2
2097 Female, age 72, unknown 68.4
1890 Male, age 53, unknown 63.4
1848 Female, age 42, unknown 62.4
2849 Male, age 72, unknown 58.6
Median raphe nucleus
nTPM: 60.4
2220 Male, age 76, midline 60.4
Pedunculopontine tegmental nucleus
nTPM: 57.6
1921 Female, age 85, both hemispheres 65.8
2334 Male, age 80, both hemispheres 61.8
2338 Male, age 61, both hemispheres 45.2
Periaquaductal grey, anterior
nTPM: 70.3
1947 Male, age 18, unknown 72.5
2502 Female, age 75, unknown 69.9
1795 Male, age 51, unknown 68.7
Periaquaductal grey, dorsal
nTPM: 61.5
1840 Male, age 53, unknown 63.2
2464 Female, age 72, unknown 63.1
1831 Male, age 72, unknown 60.5
2850 Male, age 76, both hemispheres 59.0
Periaquaductal grey, lateral
nTPM: 59.4
2053 Male, age 18, unknown 66.8
2140 Male, age 76, both hemispheres 58.2
2272 Male, age 74, both hemispheres 53.1
Pretectal area
nTPM: 65.3
2667 Female, age 75, unknown 76.1
1815 Male, age 53, unknown 68.0
1816 Male, age 51, unknown 68.0
2316 Male, age 76, right hemisphere 66.0
2224 Female, age 72, unknown 65.6
2825 Male, age 18, unknown 64.7
1817 Female, age 42, unknown 63.2
2007 Male, age 72, unknown 62.8
1944 Female, age 72, unknown 61.5
2273 Male, age 74, both hemispheres 61.4
2407 Male, age 75, both hemispheres 61.0
Red nucleus
nTPM: 68.7
1821 Female, age 72, unknown 79.8
2503 Female, age 72, unknown 73.9
2769 Male, age 72, unknown 71.2
1954 Female, age 42, unknown 70.4
1904 Male, age 53, unknown 70.1
1865 Male, age 51, unknown 68.6
2227 Male, age 72, unknown 68.3
2588 Male, age 74, left hemisphere 67.1
2823 Male, age 76, right hemisphere 65.6
2584 Male, age 75, left hemisphere 64.6
2725 Female, age 75, unknown 62.6
2785 Male, age 18, unknown 62.4
Substantia nigra
nTPM: 68.9
1916 Female, age 42, unknown 79.8
1851 Male, age 51, unknown 76.7
2241 Male, age 72, unknown 71.4
2699 Male, age 18, unknown 70.8
2583 Male, age 75, right hemisphere 67.3
1889 Female, age 72, unknown 67.0
1941 Male, age 53, unknown 66.9
2590 Female, age 75, unknown 64.4
2409 Female, age 72, unknown 63.3
2665 Male, age 74, both hemispheres 61.7
Superior colliculus
nTPM: 66.2
2664 Male, age 75, both hemispheres 72.6
1796 Male, age 53, unknown 70.3
1913 Female, age 42, unknown 67.5
2261 Male, age 18, unknown 67.2
1895 Male, age 76, right hemisphere 67.1
1995 Male, age 72, unknown 66.7
2668 Female, age 75, unknown 66.6
1839 Male, age 51, unknown 63.3
2587 Male, age 74, left hemisphere 60.4
2087 Female, age 72, unknown 60.1
Ventral tegmental area
nTPM: 68.0
1915 Female, age 42, unknown 75.1
2410 Female, age 72, unknown 70.8
1942 Male, age 51, unknown 69.1
2218 Male, age 76, both hemispheres 65.4
2021 Male, age 53, unknown 64.7
2223 Female, age 72, unknown 62.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.5
Samples: 139

Max nTPM: 116.4
Min nTPM: 30.1
Std nTPM: 18.4
Median nTPM: 68.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 116.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 115.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 110.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 107.9
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 102.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 102.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 102.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 101.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 101.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 101.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 100.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.5
FF:10158-103A5 76 years, female 104.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.4
Pig sample Sample description nTPM
Midbrain
nTPM: 54.5
Samples: 4

Max nTPM: 68.9
Min nTPM: 46.1
Sample A Female 68.9
Sample B Female 46.2
Sample C Male 56.8
Sample D Male 46.1
Periaqueductal gray
nTPM: 43.7
Samples: 3

Max nTPM: 49.2
Min nTPM: 37.6
Sample B Female 44.2
Sample C Male 49.2
Sample D Male 37.6
Substantia nigra
nTPM: 49.7
Samples: 4

Max nTPM: 59.1
Min nTPM: 45.9
Sample A Female 59.1
Sample B Female 45.9
Sample C Male 47.3
Sample D Male 46.5
Superior colliculi
nTPM: 58.5
Samples: 4

Max nTPM: 65.8
Min nTPM: 51.8
Sample A Female 65.8
Sample B Female 63.7
Sample C Male 52.5
Sample D Male 51.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 58.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.1
Samples: 4

Max nTPM: 60.4
Min nTPM: 56.0
Sample A Male 60.4
Sample B Male 56.0
Sample C Female 56.8
Sample D Female 59.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
532571 Antisense, RP_040810_02_B05, Mouse strain C57BL/6J (56 days, male) 2.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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